RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780614|ref|YP_003065027.1| F0F1 ATP synthase subunit
epsilon [Candidatus Liberibacter asiaticus str. psy62]
         (135 letters)



>gnl|CDD|145793 pfam02823, ATP-synt_DE_N, ATP synthase, Delta/Epsilon chain,
          beta-sandwich domain.  Part of the ATP synthase CF(1).
          These subunits are part of the head unit of the ATP
          synthase. The subunit is called epsilon in bacteria and
          delta in mitochondria. In bacteria the delta (D)
          subunit is equivalent to the mitochondrial Oligomycin
          sensitive subunit, OSCP (pfam00213).
          Length = 80

 Score = 86.3 bits (215), Expect = 2e-18
 Identities = 32/80 (40%), Positives = 49/80 (61%)

Query: 7  LHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYV 66
          L  E+V+PE+ VFSGEV+ VV P   G+  +L GHAP+LT +K G++ I     E  +  
Sbjct: 1  LKLEIVTPERVVFSGEVEMVVAPGTEGEFGILPGHAPLLTALKPGVLRIKTEDGEEEKIA 60

Query: 67 VIGGICDIVPSHCTVLSETI 86
          V GG  ++ P+  T+L++  
Sbjct: 61 VSGGFLEVQPNEVTILADEA 80


>gnl|CDD|30704 COG0355, AtpC, F0F1-type ATP synthase, epsilon subunit
           (mitochondrial delta subunit) [Energy production and
           conversion].
          Length = 135

 Score = 85.3 bits (211), Expect = 5e-18
 Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 1/121 (0%)

Query: 5   NDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHR 64
            +L  E+VSPE  ++SGEV+SVV+P+  G++ +L GHAP++T +K G+V I     +   
Sbjct: 2   AELKLEIVSPEGIIYSGEVKSVVVPTTEGELGILPGHAPLITALKPGVVRIKTEDGDKEE 61

Query: 65  YVVI-GGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQL 123
            + + GG  ++ P+  T+L+++    D+      E+  +    +L +  D     + E  
Sbjct: 62  KIAVSGGFLEVQPNEVTILADSAERADDIDEARAEEAKERAEKELESAKDDKDYRRAEAA 121

Query: 124 L 124
           L
Sbjct: 122 L 122


>gnl|CDD|36969 KOG1758, KOG1758, KOG1758, Mitochondrial F1F0-ATP synthase, subunit
           delta/ATP16 [Energy production and conversion].
          Length = 159

 Score = 58.5 bits (141), Expect = 6e-10
 Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 2/117 (1%)

Query: 5   NDLHFELVSPEKCVFSG-EVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIH 63
             L      P   V+ G EV  V +P+  G I VL  H P +  +K G+V++        
Sbjct: 27  EKLKLTFALPNTTVYDGAEVTQVDVPTLSGQIGVLANHVPTIQVLKPGVVSVHEGSGTKS 86

Query: 64  RYVVIGGICDIVP-SHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQ 119
           +Y V  G   +   S   +L+E  + +++      ++ +++  + L +  D  +  +
Sbjct: 87  KYFVSSGFATVNADSSLQILAEEAVKLEDIDPSEAQQLLEKAQAKLVSASDEREAAE 143


>gnl|CDD|177003 CHL00063, atpE, ATP synthase CF1 epsilon subunit.
          Length = 134

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 17/47 (36%), Positives = 30/47 (63%)

Query: 12 VSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLS 58
          ++P + V+  EV+ ++LP+  G I VL  HAP+ T +  G++ I L+
Sbjct: 8  LTPNRIVWDSEVEEIILPTNSGQIGVLPNHAPIATALDIGVLRIRLN 54


>gnl|CDD|37135 KOG1924, KOG1924, KOG1924, RhoA GTPase effector DIA/Diaphanous
           [Signal transduction mechanisms, Cytoskeleton].
          Length = 1102

 Score = 26.1 bits (57), Expect = 3.1
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 10  ELVSPEK-CVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEI 62
           +L  PE+  V   +V+   L   L  I   +  +  +  IK  IV ++ +CEE+
Sbjct: 760 DLPEPEQFVVVMSQVKR--LRPRLSAILFKLTFSEQVNNIKPDIVAVTAACEEL 811


>gnl|CDD|37783 KOG2572, KOG2572, KOG2572, Ribosome biogenesis protein -
           Nop58p/Nop5p [RNA processing and modification,
           Translation, ribosomal structure and biogenesis].
          Length = 498

 Score = 25.4 bits (55), Expect = 4.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 92  ACLQALEKRIDEVCSDLNNICDVDQRFQMEQLLVDLS 128
           A   AL  RID +  +  N   V+ R ++E+ L  L 
Sbjct: 361 AAKTALAARIDALGEESTNEIGVENRAKLEKRLRSLE 397


>gnl|CDD|36242 KOG1024, KOG1024, KOG1024, Receptor-like protein tyrosine kinase
           RYK/derailed [Signal transduction mechanisms].
          Length = 563

 Score = 25.0 bits (54), Expect = 7.8
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 16/73 (21%)

Query: 42  APVLTTIKSGIVTISLSC--EEIHRYVVIGGICDIVPSHCTV------------LSETIL 87
           A  +TTI+  ++   L+   E +H + VI    DI   +C +            LS  + 
Sbjct: 390 AQTVTTIQLVLMASQLAMAMEHLHNHGVIHK--DIAARNCVIDDQLQVKLTDSALSRDLF 447

Query: 88  PMDNACLQALEKR 100
           P D  CL   E R
Sbjct: 448 PGDYHCLGDNENR 460


>gnl|CDD|146601 pfam04054, Not1, CCR4-Not complex component, Not1.  The Ccr4-Not
           complex is a global regulator of transcription that
           affects genes positively and negatively and is thought
           to regulate transcription factor TFIID.
          Length = 375

 Score = 24.9 bits (55), Expect = 7.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 71  ICDIVPSHCTVLSETIL 87
           +CD +P +C  L   IL
Sbjct: 122 LCDAIPPNCIQLRNLIL 138


>gnl|CDD|143619 cd07358, harmonin_N_like_1, Domains similar to the N-terminal
          protein-binding module of harmonin.  This domain is a
          putative protein-binding module based on its sequence
          similarity to the N-terminal domain of harmonin.
          Harmonin (not belonging to this group) is a
          postsynaptic density-95/discs-large/ZO-1 (PDZ)
          domain-containing scaffold protein, which organizes the
          Usher protein network of the inner ear and the retina.
          This domain is also related to domains found in several
          other PDZ domain-containing scaffold proteins which
          organize supramolecular complexes. This subgroup is
          comprised of uncharacterized PDZ-containing proteins
          including a protein designated Bos taurus PDZ
          containing 7 which has an N-terminal PDZ domain and a
          C-terminal harmonin_N_like domain; however the
          characterized human PDZ containing 7 containing two PDZ
          domains does not appear to contain a harmonin_N_like
          domain.
          Length = 78

 Score = 24.4 bits (53), Expect = 9.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 14 PEKCVFSGEVQSVVLPSELGDITVLV 39
          PEK +   +++SVV P++LG    +V
Sbjct: 51 PEKLLLLRDIRSVVTPTDLGRFDSMV 76


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.324    0.139    0.412 

Gapped
Lambda     K      H
   0.267   0.0689    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,625,294
Number of extensions: 78349
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 16
Length of query: 135
Length of database: 6,263,737
Length adjustment: 84
Effective length of query: 51
Effective length of database: 4,448,581
Effective search space: 226877631
Effective search space used: 226877631
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (23.9 bits)