RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780614|ref|YP_003065027.1| F0F1 ATP synthase subunit epsilon [Candidatus Liberibacter asiaticus str. psy62] (135 letters) >gnl|CDD|173198 PRK14736, atpC, F0F1 ATP synthase subunit epsilon; Provisional. Length = 133 Score = 98.3 bits (245), Expect = 6e-22 Identities = 45/121 (37%), Positives = 76/121 (62%) Query: 7 LHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYV 66 HF+LV PE+ ++SGEV++V LP G++TVL GHAPVLTT+K G++T++ + R Sbjct: 4 FHFDLVGPERTLYSGEVEAVQLPGSEGEMTVLPGHAPVLTTLKVGVITVTETTGNGKRIY 63 Query: 67 VIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLLVD 126 V GG +I P+ TVL+E P++ + +++ I+ V + + D+D+R + +V Sbjct: 64 VRGGFAEIGPTSVTVLAERAAPVEELTPEMIDREIEAVEMERDATQDLDKREALNAQIVQ 123 Query: 127 L 127 + Sbjct: 124 M 124 >gnl|CDD|179070 PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated. Length = 135 Score = 92.9 bits (232), Expect = 2e-20 Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 3/131 (2%) Query: 5 NDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHR 64 L ++VSPE ++SGEV+ VV+P G++ +L GHAP+LT +K G+V I E Sbjct: 2 ATLTVDIVSPEGLIYSGEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDGEEEV 61 Query: 65 YVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLL 124 V GG ++ P TVL+++ D+ E+ + L N D + Sbjct: 62 IAVSGGFLEVQPDKVTVLADSAERADDIDEARAEEAKERAEEALENKHD---DVDYARAQ 118 Query: 125 VDLSCLRRRIQ 135 L+ R++ Sbjct: 119 AALARAIARLR 129 >gnl|CDD|139579 PRK13448, atpC, F0F1 ATP synthase subunit epsilon; Provisional. Length = 135 Score = 82.1 bits (203), Expect = 4e-17 Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 1/103 (0%) Query: 8 HFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVV 67 HF+LVSPEK FSGEV V +P GD VL GHAPV+ I+ GI+T++ + + VV Sbjct: 5 HFDLVSPEKLAFSGEVDQVDIPGVEGDFGVLAGHAPVVAVIRPGILTVTAGGNQ-QKIVV 63 Query: 68 IGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNN 110 +GG+ ++ TVL++ + + L I E+ + L Sbjct: 64 LGGLAEVSEKGLTVLADVATSVADLDLAQFAATIAEMEAQLAG 106 >gnl|CDD|130283 TIGR01216, ATP_synt_epsi, ATP synthase, F1 epsilon subunit (delta in mitochondria). This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. Length = 130 Score = 80.8 bits (200), Expect = 1e-16 Identities = 30/79 (37%), Positives = 50/79 (63%) Query: 7 LHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYV 66 L E+V+PE ++SGEV+SV+LP G++ +L GHAP++T +K G+V I ++ Sbjct: 2 LKLEIVTPEGEIYSGEVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEHIA 61 Query: 67 VIGGICDIVPSHCTVLSET 85 V GG ++ P T+L++ Sbjct: 62 VSGGFAEVQPDKVTILADG 80 >gnl|CDD|184058 PRK13449, atpC, F0F1 ATP synthase subunit epsilon; Provisional. Length = 88 Score = 79.8 bits (197), Expect = 2e-16 Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 7/83 (8%) Query: 6 DLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSC----EE 61 LHFELV+PE+ + SGEV VV+P GD VL GHAP +TT++ G VT+ S E Sbjct: 3 KLHFELVTPERLLRSGEVDMVVVPGTEGDFGVLAGHAPFMTTLREGEVTVYSSDGAAPEV 62 Query: 62 IHRYVVIGGICDIVPSHCTVLSE 84 H V GG ++ T+L+E Sbjct: 63 FH---VQGGFAEVNEKGLTILAE 82 >gnl|CDD|106400 PRK13443, atpC, F0F1 ATP synthase subunit epsilon; Provisional. Length = 136 Score = 70.0 bits (171), Expect = 2e-13 Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 1/101 (0%) Query: 3 LVNDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEI 62 + L F+LVSPE+ + S + +V +P GD+T + GHAP +TT++ GI+ Sbjct: 1 MAGTLQFDLVSPERRLASFQATAVQIPGADGDMTAMEGHAPTITTLRPGILRAH-GPSGT 59 Query: 63 HRYVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDE 103 Y V GG +I + +VL+E +P++ L++ I E Sbjct: 60 QEYAVTGGFAEINATSISVLAEKAIPVEELTGAVLDEFIAE 100 >gnl|CDD|184056 PRK13446, atpC, F0F1 ATP synthase subunit epsilon; Provisional. Length = 136 Score = 65.7 bits (161), Expect = 3e-12 Identities = 34/79 (43%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Query: 7 LHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYV 66 L E+V+PEK V S EV V P LG+ VL GHAP LT +K G +T + H Sbjct: 5 LKLEIVTPEKKVLSEEVDEVGAPGVLGEFGVLPGHAPFLTALKIGELTYKKGGKT-HYVA 63 Query: 67 VIGGICDIVPSHCTVLSET 85 V GG ++ + TVL+ET Sbjct: 64 VNGGFAEVSNNKVTVLAET 82 >gnl|CDD|184055 PRK13442, atpC, F0F1 ATP synthase subunit epsilon; Provisional. Length = 89 Score = 59.6 bits (145), Expect = 2e-10 Identities = 29/80 (36%), Positives = 42/80 (52%) Query: 6 DLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRY 65 LH +V+ ++ V+SGE VV + GDI +L GH P+L ++SG VT+ E Sbjct: 5 TLHVNIVAADRPVWSGEATMVVARTTEGDIGILPGHEPLLGVLESGTVTVVTPGGERISA 64 Query: 66 VVIGGICDIVPSHCTVLSET 85 V GG + TVL+E Sbjct: 65 AVDGGFISFDSNKLTVLAER 84 >gnl|CDD|139576 PRK13444, atpC, F0F1 ATP synthase subunit epsilon; Provisional. Length = 127 Score = 54.5 bits (131), Expect = 9e-09 Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 1/80 (1%) Query: 5 NDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHR 64 L ++SPEK ++ GEV S+++P G +L HAP++ T+ G++ I E++ R Sbjct: 4 KKLTVSVISPEKILYKGEVDSLIVPGSEGFFGILPNHAPLVATLGIGLLEIR-KGEKLKR 62 Query: 65 YVVIGGICDIVPSHCTVLSE 84 V GG C++ + ++L++ Sbjct: 63 ISVEGGFCEVKDNQISILTD 82 >gnl|CDD|106409 PRK13452, atpC, F0F1 ATP synthase subunit epsilon; Provisional. Length = 145 Score = 47.0 bits (111), Expect = 1e-06 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 7 LHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYV 66 L ++VSP VF GE V L G++ + GH +L+T+ +G+V + + Sbjct: 6 LKVDVVSPLGSVFKGEADMVSLRGSAGEMGIAYGHTELLSTLPAGVVNVRKD-QHTDVLY 64 Query: 67 VIGGICDIVPSHCTVLSETILPMDN 91 V GGI ++ P+ T++ + + +N Sbjct: 65 VSGGIVEVTPTRVTIMVDDMERAEN 89 >gnl|CDD|173197 PRK14735, atpC, F0F1 ATP synthase subunit epsilon; Provisional. Length = 139 Score = 47.3 bits (112), Expect = 1e-06 Identities = 23/80 (28%), Positives = 46/80 (57%), Gaps = 1/80 (1%) Query: 7 LHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYV 66 +H E+V+ E+ V S +V + P++ G + +L HAP+LT ++ G + I + + Sbjct: 3 IHLEIVTAERVVLSDDVDMISAPTKDGRVGILPRHAPLLTILEPGELDIVKNGVRT-PFA 61 Query: 67 VIGGICDIVPSHCTVLSETI 86 + GG +++P T+L++T Sbjct: 62 ISGGFMEVLPHRVTILADTA 81 >gnl|CDD|100879 PRK01474, atpC, F0F1 ATP synthase subunit epsilon; Validated. Length = 112 Score = 43.3 bits (102), Expect = 2e-05 Identities = 20/86 (23%), Positives = 50/86 (58%), Gaps = 6/86 (6%) Query: 10 ELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHR----Y 65 ++++P F + + V +P E G VL H P++ ++K+G+V + + +++H+ Y Sbjct: 8 KIITPLSIAFEKQAKMVTMPGEEGMFGVLPSHVPMIVSLKAGLVQVYI--DDMHKSENTY 65 Query: 66 VVIGGICDIVPSHCTVLSETILPMDN 91 ++ GG+ ++ ++ + +ET + + N Sbjct: 66 LISGGVTEVTGNYINIATETAINVTN 91 >gnl|CDD|184059 PRK13450, atpC, F0F1 ATP synthase subunit epsilon; Provisional. Length = 132 Score = 42.8 bits (101), Expect = 3e-05 Identities = 18/51 (35%), Positives = 30/51 (58%) Query: 5 NDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTI 55 N++ +++PEK + GEV+ V+ GDI +L H P++T +K I I Sbjct: 2 NNIKLTILTPEKNFYIGEVKEVITEGLDGDIAILPNHVPLITYLKPTITKI 52 >gnl|CDD|179059 PRK00539, atpC, F0F1 ATP synthase subunit epsilon; Validated. Length = 133 Score = 32.6 bits (74), Expect = 0.037 Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 2/119 (1%) Query: 7 LHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYV 66 L F ++SP ++ S + + G + AP++ I+S + I+ + ++ R Sbjct: 4 LRFLVLSPSGIKLDEKIISAQVKTTEGYAGLNRNRAPLIAAIQSHVCKITFA-DKTKRSA 62 Query: 67 VIG-GICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLL 124 +IG G+ I + + +E + D KR E+ + + D ++EQ L Sbjct: 63 IIGAGLLLIKKTEAKIFTENFVFADELDYDETLKRKKELERKIKHTKDTKLNIKIEQNL 121 >gnl|CDD|177978 PLN02344, PLN02344, chorismate mutase. Length = 284 Score = 28.0 bits (63), Expect = 0.87 Identities = 10/12 (83%), Positives = 10/12 (83%) Query: 90 DNACLQALEKRI 101 D ACLQAL KRI Sbjct: 170 DLACLQALSKRI 181 >gnl|CDD|172059 PRK13451, atpC, F0F1 ATP synthase subunit epsilon; Provisional. Length = 101 Score = 27.8 bits (62), Expect = 0.99 Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 5/82 (6%) Query: 7 LHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYV 66 + ++V+P V+ E V + G++ +L AP++ + V I S ++ + Y Sbjct: 1 MKVKIVTPYGIVYDRESDFVSFRTVEGEMGILPRRAPIIAKLSVCDVKIK-SGDDEYEYK 59 Query: 67 VIGG--ICDIVPSHCTVLSETI 86 V G CD + +++E Sbjct: 60 VADGFLHCD--GKNVIIITEEA 79 >gnl|CDD|182994 PRK11145, pflA, pyruvate formate lyase-activating enzyme 1; Provisional. Length = 246 Score = 26.5 bits (59), Expect = 2.3 Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 1/28 (3%) Query: 64 RYVVIGGICDIVPSHCTVLSETILPMDN 91 RYVV+ G D S L E I M N Sbjct: 167 RYVVVPGWTDDDDS-AHRLGEFIKDMGN 193 >gnl|CDD|162325 TIGR01373, soxB, sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. Length = 407 Score = 26.3 bits (58), Expect = 2.4 Identities = 8/20 (40%), Positives = 12/20 (60%) Query: 69 GGICDIVPSHCTVLSETILP 88 GGI D+ P ++ +T LP Sbjct: 336 GGIVDVTPDGSPIIGKTPLP 355 >gnl|CDD|178002 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring). Length = 433 Score = 25.3 bits (55), Expect = 5.6 Identities = 14/33 (42%), Positives = 17/33 (51%) Query: 92 ACLQALEKRIDEVCSDLNNICDVDQRFQMEQLL 124 A L+A+EK+IDEV D D QLL Sbjct: 369 AELKAIEKKIDEVVEDAVEFADASPLPPRSQLL 401 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.324 0.139 0.412 Gapped Lambda K H 0.267 0.0652 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 2,151,990 Number of extensions: 123371 Number of successful extensions: 312 Number of sequences better than 10.0: 1 Number of HSP's gapped: 307 Number of HSP's successfully gapped: 27 Length of query: 135 Length of database: 5,994,473 Length adjustment: 83 Effective length of query: 52 Effective length of database: 4,201,009 Effective search space: 218452468 Effective search space used: 218452468 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 52 (24.0 bits)