RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780614|ref|YP_003065027.1| F0F1 ATP synthase subunit epsilon [Candidatus Liberibacter asiaticus str. psy62] (135 letters) >1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A {Escherichia coli} (A:) Length = 138 Score = 100 bits (251), Expect = 6e-23 Identities = 29/120 (24%), Positives = 56/120 (46%) Query: 5 NDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHR 64 + H ++VS E+ +FSG V+ + + G++ + GHAP+LT IK G++ I Sbjct: 2 STYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEF 61 Query: 65 YVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLL 124 + GGI ++ P + TVL++T + + + + +++ Q L Sbjct: 62 IYLSGGILEVQPGNVTVLADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAEL 121 >2qe7_H ATP synthase subunit epsilon; blockage of ATP hydrolysis, F1-ATPase, single particle analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} (H:) Length = 135 Score = 98.4 bits (245), Expect = 3e-22 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 3/131 (2%) Query: 5 NDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHR 64 + ++V+PE+ VF GE V+ G++ V+ GH P++T +K+ V I +E Sbjct: 2 ATVQVDIVTPERKVFQGEADIVIARGVEGELGVMAGHIPLVTPLKTAPVRIKQGDKE-TL 60 Query: 65 YVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLL 124 V GG ++ P +L++T + ++ +K + L + D+ + + Sbjct: 61 IAVSGGFLEVRPDKVNILADTAELPEEIDVERAKKAKARHETILKRLDKTDKDYLRHKR- 119 Query: 125 VDLSCLRRRIQ 135 L R+Q Sbjct: 120 -ALERAEVRLQ 129 >2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB: 2e5t_A 2e5u_A (A:) Length = 133 Score = 97.2 bits (242), Expect = 8e-22 Identities = 21/120 (17%), Positives = 52/120 (43%), Gaps = 1/120 (0%) Query: 5 NDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHR 64 +H +V+P+ V+ +V+ V + ++ G++ +L GH P++ ++ + + Sbjct: 2 KTIHVSVVTPDGPVYEDDVEMVSVKAKSGELGILPGHIPLVAPLEISAARLKKGGKT-QY 60 Query: 65 YVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLL 124 V GG ++ P T+L++ ++ + + + L + D + E L Sbjct: 61 IAVSGGFLEVRPDKVTILAQAAERAEDIDVLRAKAAKERAERRLQSQQDDIDFKRAELAL 120 >2hld_H ATP synthase delta chain, mitochondrial; ATP phosphorylase (H+ transporting), F1FO, F1- ATPase, hydrolase; HET: ANP; 2.80A {Saccharomyces cerevisiae} PDB: 3fks_H (H:) Length = 138 Score = 94.1 bits (234), Expect = 6e-21 Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 5/132 (3%) Query: 5 NDLHFELVSPEKCVFSG-EVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIH 63 + L + P + ++SG EV V LP++ G I VL H P + + G+V + Sbjct: 8 SGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKK 67 Query: 64 RYVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQL 123 ++ G S V + P+++ + ++ + E ++++ + + Sbjct: 68 FFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSSDAREAA----EA 123 Query: 124 LVDLSCLRRRIQ 135 + + L Sbjct: 124 AIQVEVLENLQS 135 >2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A (A:1-86) Length = 86 Score = 87.0 bits (216), Expect = 7e-19 Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 7 LHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYV 66 + +++P+K V+ + V+LPS G + +L HAP+LT +++G++ + E Sbjct: 3 MTVRVIAPDKTVWDAPAEEVILPSTTGQLGILSNHAPLLTALETGVMRVRQDREW-VAIA 61 Query: 67 VIGGICDIVPSHCTVLSETILPMDN 91 ++GG ++ + T+L D Sbjct: 62 LMGGFAEVENNEVTILVNGAERGDT 86 >2ck3_H ATP synthase delta chain; ATP phosphorylase, ATP phosphorylase (H+ transporting), F1FO ATP synthase, F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A {Bos taurus} (H:1-100) Length = 100 Score = 80.1 bits (198), Expect = 1e-16 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 2/87 (2%) Query: 5 NDLHFELVSPEKCVF-SGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIH 63 + F SP + F S V+ V +P++ G +L H P L ++ G+V + Sbjct: 14 GQMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTS 73 Query: 64 RYVVIGGICDIVP-SHCTVLSETILPM 89 +Y V G + S +L+E + + Sbjct: 74 KYFVSSGSVTVNADSSVQLLAEEAVTL 100 >2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting), transit peptide, F1FO ATP synthase, ATP phosphorylase; 3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H (H:1-123) Length = 123 Score = 78.7 bits (194), Expect = 2e-16 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 2/88 (2%) Query: 5 NDLHFELVSPEKCVFSG-EVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIH 63 + F SP + F+ V+ V +P++ G +L H P L ++ G+V + Sbjct: 36 GQMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTS 95 Query: 64 RYVVIGGICDIVP-SHCTVLSETILPMD 90 +Y V G + S +L+E + +D Sbjct: 96 KYFVSSGSVTVNADSSVQLLAEEAVTLD 123 >1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} (A:1-115,A:187-490) Length = 419 Score = 31.2 bits (69), Expect = 0.058 Identities = 8/61 (13%), Positives = 19/61 (31%), Gaps = 5/61 (8%) Query: 59 CEEIHRYVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRF 118 E+ + + + D+V + V + + L+K + + D F Sbjct: 99 VAEMKKRN-MRLMIDVVIDNPKVRED----LYAMLRFWLDKGVSGMRFDTVATYSKIPGF 153 Query: 119 Q 119 Sbjct: 154 P 154 >1mkf_A M3; decoy receptor, PSI, protein structure initiative; 2.10A {Murid herpesvirus 4} (A:1-210) Length = 210 Score = 30.5 bits (68), Expect = 0.088 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 10/80 (12%) Query: 39 VGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLSETILPMDNACLQALE 98 +G AP L+T SG+ T S+ +I R D + +HC +ET + C L+ Sbjct: 3 LGLAPALSTHSSGVSTQSVDLSQIKR-------GDEIQAHCLTPAETEV---TECAGILK 52 Query: 99 KRIDEVCSDLNNICDVDQRF 118 + + +L +C+V + Sbjct: 53 DVLSKNLHELQGLCNVKNKM 72 >1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A* (A:1-102,A:174-475) Length = 404 Score = 29.3 bits (64), Expect = 0.18 Identities = 8/65 (12%), Positives = 18/65 (27%), Gaps = 5/65 (7%) Query: 59 CEEIHRYVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRF 118 E+ + + + D+V + E + L+K + + D F Sbjct: 86 MAELKKRG-MRLMVDVVIDTPKLREE----LYAMLRFWLDKGVSGMRFDTVATYSKTPGF 140 Query: 119 QMEQL 123 Sbjct: 141 PDLTP 145 >1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} (A:1-130,A:202-404) Length = 333 Score = 28.0 bits (61), Expect = 0.46 Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 5/62 (8%) Query: 59 CEEIHRYVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRF 118 + H+ I I D VP + T+ + +A +Q + D + D + Sbjct: 114 VNDAHQNG-IKVIVDFVPENGTIAQY----LTDAAVQLVAHGADGLRIDAVKHFNSGFSK 168 Query: 119 QM 120 + Sbjct: 169 SL 170 >1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} (A:124-242,A:299-500) Length = 321 Score = 27.2 bits (59), Expect = 0.74 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 5/66 (7%) Query: 59 CEEIHRYVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRF 118 +E HR I I D V + V + + +E+ ID D+ N D Sbjct: 103 VDEAHRRG-IKIILDAVFENPEVKEY----LFDVARFWMEQGIDGWRLDVANEVDHAFWR 157 Query: 119 QMEQLL 124 + +L+ Sbjct: 158 EFRRLV 163 >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} (A:272-364) Length = 93 Score = 27.0 bits (59), Expect = 0.99 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 12/46 (26%) Query: 76 PSH--CTVLSETILPMD----------NACLQALEKRIDEVCSDLN 109 P H TVL + ++ +D LQ L++++DEV LN Sbjct: 5 PYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLN 50 >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A (A:358-657) Length = 300 Score = 25.6 bits (56), Expect = 2.3 Identities = 10/28 (35%), Positives = 15/28 (53%) Query: 94 LQALEKRIDEVCSDLNNICDVDQRFQME 121 + L+KRID V + N + + FQ E Sbjct: 4 VNELKKRIDSVEPEFNKLTGIRDEFQKE 31 >2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} (A:) Length = 270 Score = 25.6 bits (56), Expect = 2.6 Identities = 6/43 (13%), Positives = 11/43 (25%) Query: 8 HFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKS 50 + + G +VGH P L ++ Sbjct: 116 VIFSDAKRVEDRXNDPFIXSQNEVKGKKVGVVGHFPHLESLLE 158 >1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} (A:) Length = 406 Score = 25.2 bits (54), Expect = 3.4 Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 9/78 (11%) Query: 45 LTTIKSGIVTISLSCEEIHRYV---------VIGGICDIVPSHCTVLSETILPMDNACLQ 95 L G+ + +I +Y IGG C P H ++E + P Sbjct: 264 LPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPP 323 Query: 96 ALEKRIDEVCSDLNNICD 113 A EK + Sbjct: 324 ASEKHGSWGSGLDMHTKP 341 >2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P (A:141-170,A:233-269) Length = 67 Score = 24.3 bits (53), Expect = 6.9 Identities = 9/41 (21%), Positives = 22/41 (53%) Query: 94 LQALEKRIDEVCSDLNNICDVDQRFQMEQLLVDLSCLRRRI 134 ++ ++K++ +C D N + D + + +L +L LR + Sbjct: 9 IKRIKKKLSLLCIDFNKNLNEDCKEENSAILKELVTLRAQK 49 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.324 0.139 0.412 Gapped Lambda K H 0.267 0.0664 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,050,890 Number of extensions: 44545 Number of successful extensions: 157 Number of sequences better than 10.0: 1 Number of HSP's gapped: 151 Number of HSP's successfully gapped: 22 Length of query: 135 Length of database: 4,956,049 Length adjustment: 79 Effective length of query: 56 Effective length of database: 2,285,454 Effective search space: 127985424 Effective search space used: 127985424 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 50 (23.2 bits)