RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780614|ref|YP_003065027.1| F0F1 ATP synthase subunit
epsilon [Candidatus Liberibacter asiaticus str. psy62]
         (135 letters)



>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A
           {Escherichia coli} (A:)
          Length = 138

 Score =  100 bits (251), Expect = 6e-23
 Identities = 29/120 (24%), Positives = 56/120 (46%)

Query: 5   NDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHR 64
           +  H ++VS E+ +FSG V+ + +    G++ +  GHAP+LT IK G++ I         
Sbjct: 2   STYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEF 61

Query: 65  YVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLL 124
             + GGI ++ P + TVL++T +   +       +   +    +++        Q    L
Sbjct: 62  IYLSGGILEVQPGNVTVLADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAEL 121


>2qe7_H ATP synthase subunit epsilon; blockage of ATP hydrolysis,
           F1-ATPase, single particle analysis, thermoalkaliphilic,
           hydrolase; 3.06A {Bacillus SP} (H:)
          Length = 135

 Score = 98.4 bits (245), Expect = 3e-22
 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 3/131 (2%)

Query: 5   NDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHR 64
             +  ++V+PE+ VF GE   V+     G++ V+ GH P++T +K+  V I    +E   
Sbjct: 2   ATVQVDIVTPERKVFQGEADIVIARGVEGELGVMAGHIPLVTPLKTAPVRIKQGDKE-TL 60

Query: 65  YVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLL 124
             V GG  ++ P    +L++T    +   ++  +K      + L  +   D+ +   +  
Sbjct: 61  IAVSGGFLEVRPDKVNILADTAELPEEIDVERAKKAKARHETILKRLDKTDKDYLRHKR- 119

Query: 125 VDLSCLRRRIQ 135
             L     R+Q
Sbjct: 120 -ALERAEVRLQ 129


>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase,
           epsilon subunit, hydrolase; HET: ATP; 1.92A {Bacillus
           SP} PDB: 2e5t_A 2e5u_A (A:)
          Length = 133

 Score = 97.2 bits (242), Expect = 8e-22
 Identities = 21/120 (17%), Positives = 52/120 (43%), Gaps = 1/120 (0%)

Query: 5   NDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHR 64
             +H  +V+P+  V+  +V+ V + ++ G++ +L GH P++  ++     +    +    
Sbjct: 2   KTIHVSVVTPDGPVYEDDVEMVSVKAKSGELGILPGHIPLVAPLEISAARLKKGGKT-QY 60

Query: 65  YVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQLL 124
             V GG  ++ P   T+L++     ++  +   +   +     L +  D     + E  L
Sbjct: 61  IAVSGGFLEVRPDKVTILAQAAERAEDIDVLRAKAAKERAERRLQSQQDDIDFKRAELAL 120


>2hld_H ATP synthase delta chain, mitochondrial; ATP phosphorylase
           (H+ transporting), F1FO, F1- ATPase, hydrolase; HET:
           ANP; 2.80A {Saccharomyces cerevisiae} PDB: 3fks_H (H:)
          Length = 138

 Score = 94.1 bits (234), Expect = 6e-21
 Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 5/132 (3%)

Query: 5   NDLHFELVSPEKCVFSG-EVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIH 63
           + L  +   P + ++SG EV  V LP++ G I VL  H P +  +  G+V +        
Sbjct: 8   SGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKK 67

Query: 64  RYVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRFQMEQL 123
            ++  G       S   V +    P+++   + ++  + E   ++++    +      + 
Sbjct: 68  FFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSSDAREAA----EA 123

Query: 124 LVDLSCLRRRIQ 135
            + +  L     
Sbjct: 124 AIQVEVLENLQS 135


>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase,
          epsilon subunit, ATP synthesis, CF1, hydrogen ION
          transport, hydrolase; NMR {Thermosynechococcus
          elongatus} PDB: 2rq7_A (A:1-86)
          Length = 86

 Score = 87.0 bits (216), Expect = 7e-19
 Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 7  LHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYV 66
          +   +++P+K V+    + V+LPS  G + +L  HAP+LT +++G++ +    E      
Sbjct: 3  MTVRVIAPDKTVWDAPAEEVILPSTTGQLGILSNHAPLLTALETGVMRVRQDREW-VAIA 61

Query: 67 VIGGICDIVPSHCTVLSETILPMDN 91
          ++GG  ++  +  T+L       D 
Sbjct: 62 LMGGFAEVENNEVTILVNGAERGDT 86


>2ck3_H ATP synthase delta chain; ATP phosphorylase, ATP
           phosphorylase (H+ transporting), F1FO ATP synthase,
           F1-ATPase, hydrolase, ATP synthesis; HET: ANP ADP; 1.9A
           {Bos taurus} (H:1-100)
          Length = 100

 Score = 80.1 bits (198), Expect = 1e-16
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 5   NDLHFELVSPEKCVF-SGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIH 63
             + F   SP +  F S  V+ V +P++ G   +L  H P L  ++ G+V +        
Sbjct: 14  GQMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTS 73

Query: 64  RYVVIGGICDIVP-SHCTVLSETILPM 89
           +Y V  G   +   S   +L+E  + +
Sbjct: 74  KYFVSSGSVTVNADSSVQLLAEEAVTL 100


>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+
           transporting), transit peptide, F1FO ATP synthase, ATP
           phosphorylase; 3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H
           (H:1-123)
          Length = 123

 Score = 78.7 bits (194), Expect = 2e-16
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 5   NDLHFELVSPEKCVFSG-EVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIH 63
             + F   SP +  F+   V+ V +P++ G   +L  H P L  ++ G+V +        
Sbjct: 36  GQMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTS 95

Query: 64  RYVVIGGICDIVP-SHCTVLSETILPMD 90
           +Y V  G   +   S   +L+E  + +D
Sbjct: 96  KYFVSSGSVTVNADSSVQLLAEEAVTLD 123


>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose
           isomerization, isomerase; 2.20A {Klebsiella SP}
           (A:1-115,A:187-490)
          Length = 419

 Score = 31.2 bits (69), Expect = 0.058
 Identities = 8/61 (13%), Positives = 19/61 (31%), Gaps = 5/61 (8%)

Query: 59  CEEIHRYVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRF 118
             E+ +   +  + D+V  +  V  +    +       L+K +  +  D          F
Sbjct: 99  VAEMKKRN-MRLMIDVVIDNPKVRED----LYAMLRFWLDKGVSGMRFDTVATYSKIPGF 153

Query: 119 Q 119
            
Sbjct: 154 P 154


>1mkf_A M3; decoy receptor, PSI, protein structure initiative; 2.10A
           {Murid herpesvirus 4} (A:1-210)
          Length = 210

 Score = 30.5 bits (68), Expect = 0.088
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 10/80 (12%)

Query: 39  VGHAPVLTTIKSGIVTISLSCEEIHRYVVIGGICDIVPSHCTVLSETILPMDNACLQALE 98
           +G AP L+T  SG+ T S+   +I R        D + +HC   +ET +     C   L+
Sbjct: 3   LGLAPALSTHSSGVSTQSVDLSQIKR-------GDEIQAHCLTPAETEV---TECAGILK 52

Query: 99  KRIDEVCSDLNNICDVDQRF 118
             + +   +L  +C+V  + 
Sbjct: 53  DVLSKNLHELQGLCNVKNKM 72


>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase
           family, (beta/alpha)8 barrel; 1.60A {Pseudomonas
           mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A
           2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A* (A:1-102,A:174-475)
          Length = 404

 Score = 29.3 bits (64), Expect = 0.18
 Identities = 8/65 (12%), Positives = 18/65 (27%), Gaps = 5/65 (7%)

Query: 59  CEEIHRYVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRF 118
             E+ +   +  + D+V     +  E    +       L+K +  +  D          F
Sbjct: 86  MAELKKRG-MRLMVDVVIDTPKLREE----LYAMLRFWLDKGVSGMRFDTVATYSKTPGF 140

Query: 119 QMEQL 123
                
Sbjct: 141 PDLTP 145


>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET:
           MAL ABD; 1.70A {Geobacillus stearothermophilus}
           (A:1-130,A:202-404)
          Length = 333

 Score = 28.0 bits (61), Expect = 0.46
 Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 59  CEEIHRYVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRF 118
             + H+   I  I D VP + T+       + +A +Q +    D +  D     +     
Sbjct: 114 VNDAHQNG-IKVIVDFVPENGTIAQY----LTDAAVQLVAHGADGLRIDAVKHFNSGFSK 168

Query: 119 QM 120
            +
Sbjct: 169 SL 170


>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family,
           hydrolase; 2.00A {Thermoactinomyces vulgaris}
           (A:124-242,A:299-500)
          Length = 321

 Score = 27.2 bits (59), Expect = 0.74
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 59  CEEIHRYVVIGGICDIVPSHCTVLSETILPMDNACLQALEKRIDEVCSDLNNICDVDQRF 118
            +E HR   I  I D V  +  V       + +     +E+ ID    D+ N  D     
Sbjct: 103 VDEAHRRG-IKIILDAVFENPEVKEY----LFDVARFWMEQGIDGWRLDVANEVDHAFWR 157

Query: 119 QMEQLL 124
           +  +L+
Sbjct: 158 EFRRLV 163


>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI,
           structural genomics of pathogenic protozoa consortium,
           SGPP, ANK repeat; 2.90A {Leishmania major} (A:272-364)
          Length = 93

 Score = 27.0 bits (59), Expect = 0.99
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 12/46 (26%)

Query: 76  PSH--CTVLSETILPMD----------NACLQALEKRIDEVCSDLN 109
           P H   TVL + ++ +D             LQ L++++DEV   LN
Sbjct: 5   PYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLN 50


>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase;
           3.0A {Nostoc punctiforme} PDB: 2j68_A (A:358-657)
          Length = 300

 Score = 25.6 bits (56), Expect = 2.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 94  LQALEKRIDEVCSDLNNICDVDQRFQME 121
           +  L+KRID V  + N +  +   FQ E
Sbjct: 4   VNELKKRIDSVEPEFNKLTGIRDEFQKE 31


>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics,
           PSI-2, protein structure initiative; 2.01A
           {Desulfitobacterium hafniense dcb-2} (A:)
          Length = 270

 Score = 25.6 bits (56), Expect = 2.6
 Identities = 6/43 (13%), Positives = 11/43 (25%)

Query: 8   HFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKS 50
                +        +          G    +VGH P L ++  
Sbjct: 116 VIFSDAKRVEDRXNDPFIXSQNEVKGKKVGVVGHFPHLESLLE 158


>1lt8_A Betaine-homocysteine methyltransferase; homocysteine
           metabolism, homocysteinemia, zinc, thiol alkyl transfer;
           HET: CBH CIT; 2.05A {Homo sapiens} (A:)
          Length = 406

 Score = 25.2 bits (54), Expect = 3.4
 Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 9/78 (11%)

Query: 45  LTTIKSGIVTISLSCEEIHRYV---------VIGGICDIVPSHCTVLSETILPMDNACLQ 95
           L     G+     +  +I +Y           IGG C   P H   ++E + P       
Sbjct: 264 LPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPP 323

Query: 96  ALEKRIDEVCSDLNNICD 113
           A EK          +   
Sbjct: 324 ASEKHGSWGSGLDMHTKP 341


>2o36_A ThiMet oligopeptidase; thermolysin-like domain,
           substrate-binding channel, hydrolase; 1.95A {Homo
           sapiens} PDB: 1s4b_P (A:141-170,A:233-269)
          Length = 67

 Score = 24.3 bits (53), Expect = 6.9
 Identities = 9/41 (21%), Positives = 22/41 (53%)

Query: 94  LQALEKRIDEVCSDLNNICDVDQRFQMEQLLVDLSCLRRRI 134
           ++ ++K++  +C D N   + D + +   +L +L  LR + 
Sbjct: 9   IKRIKKKLSLLCIDFNKNLNEDCKEENSAILKELVTLRAQK 49


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.324    0.139    0.412 

Gapped
Lambda     K      H
   0.267   0.0664    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,050,890
Number of extensions: 44545
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 22
Length of query: 135
Length of database: 4,956,049
Length adjustment: 79
Effective length of query: 56
Effective length of database: 2,285,454
Effective search space: 127985424
Effective search space used: 127985424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.2 bits)