RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780614|ref|YP_003065027.1| F0F1 ATP synthase subunit
epsilon [Candidatus Liberibacter asiaticus str. psy62]
         (135 letters)



>d1aqta2 b.93.1.1 (A:2-86) Epsilon subunit of F1F0-ATP synthase
          N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 85

 Score = 84.4 bits (209), Expect = 3e-18
 Identities = 27/81 (33%), Positives = 47/81 (58%)

Query: 5  NDLHFELVSPEKCVFSGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHR 64
          +  H ++VS E+ +FSG V+ + +    G++ +  GHAP+LT IK G++ I         
Sbjct: 1  STYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEF 60

Query: 65 YVVIGGICDIVPSHCTVLSET 85
            + GGI ++ P + TVL++T
Sbjct: 61 IYLSGGILEVQPGNVTVLADT 81


>d2jdih2 b.93.1.1 (H:17-101) Epsilon subunit of F1F0-ATP synthase
          N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 85

 Score = 75.2 bits (185), Expect = 2e-15
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 9  FELVSPEKCVF-SGEVQSVVLPSELGDITVLVGHAPVLTTIKSGIVTISLSCEEIHRYVV 67
          F   SP +  F S  V+ V +P++ G   +L  H P L  ++ G+V +        +Y V
Sbjct: 2  FTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFV 61

Query: 68 IGGICDIVP-SHCTVLSETILPMD 90
            G   +   S   +L+E  + +D
Sbjct: 62 SSGSVTVNADSSVQLLAEEAVTLD 85


>d5csma_ a.130.1.2 (A:) Allosteric chorismate mutase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 256

 Score = 25.1 bits (55), Expect = 2.6
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 6/37 (16%)

Query: 71  ICDIVPSHCTVLSE------TILPMDNACLQALEKRI 101
           I  I+P       +      ++   D  CLQ+L +RI
Sbjct: 122 IEKIIPLISKRDGDDKNNFGSVATRDIECLQSLSRRI 158


>d2q22a1 d.365.1.1 (A:8-138) Uncharacterized protein Ava3019
           {Anabaena variabilis [TaxId: 1172]}
          Length = 131

 Score = 24.3 bits (53), Expect = 3.7
 Identities = 3/15 (20%), Positives = 7/15 (46%)

Query: 121 EQLLVDLSCLRRRIQ 135
           +++L   +CL     
Sbjct: 8   KKILNKFNCLDIAPI 22


>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 361

 Score = 24.1 bits (51), Expect = 4.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 67  VIGGICDIVPSHCTVLSETILP 88
            IGG C   P H   ++E + P
Sbjct: 285 YIGGCCGFEPYHIRAIAEELAP 306


>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase
           MetH, N-terminal domain {Thermotoga maritima [TaxId:
           2336]}
          Length = 300

 Score = 23.8 bits (50), Expect = 6.2
 Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 9/51 (17%)

Query: 45  LTTIKSGIVTISLSCEEIHRYV---------VIGGICDIVPSHCTVLSETI 86
              +++G     L   +   ++         + GG C   P H  +  + +
Sbjct: 237 KPIVENGKTVYPLKPHDFAVHIDSYYELGVNIFGGCCGTTPEHVKLFRKVL 287


>d1xr4a1 c.124.1.2 (A:1-236) Putative citrate lyase alpha chain,
           citF2 {Salmonella typhimurium [TaxId: 90371]}
          Length = 236

 Score = 23.5 bits (51), Expect = 7.5
 Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 5/28 (17%)

Query: 27  VLPSELGDITVLVGHAPVLTTIKSGIVT 54
           +  S L D      H P++  IK+G+V 
Sbjct: 91  LASSSLIDA-----HWPLIEHIKNGVVR 113


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.412 

Gapped
Lambda     K      H
   0.267   0.0667    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 515,053
Number of extensions: 23120
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 11
Length of query: 135
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,364,116
Effective search space: 80482844
Effective search space used: 80482844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (22.4 bits)