HHsearch alignment for GI: 254780615 and conserved domain: CHL00060

>CHL00060 atpB ATP synthase CF1 beta subunit.
Probab=100.00  E-value=0  Score=1146.78  Aligned_cols=471  Identities=65%  Similarity=1.016  Sum_probs=450.4

Q ss_pred             CCCCCCCCEEEEEEECCEEEEEECC-CCCCCCCEEEECCCC-----CEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEE
Q ss_conf             6456534138999955789998166-652314189981699-----5599999987089879999814878887888889
Q gi|254780615|r    3 TKAKTESVGRIQQIMGAVVDVVFVN-SLPPIFSSLETSDKG-----SRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVI   76 (478)
Q Consensus         3 ~~~~~~~~GrV~~V~G~vvev~g~~-~~~~i~~~i~~~~~g-----~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~   76 (478)
T Consensus         3 ~~~~~k~~GrV~~V~G~VVdv~fp~~~lp~i~~~l~~~~~~~~g~~~~~~~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~   82 (480)
T CHL00060          3 STLEKKNLGRITQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVI   82 (480)
T ss_pred             CCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHEEEECCCCCCCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEE
T ss_conf             76654676089999932699993787742144432424778777644189999999469979999656877889989999


Q ss_pred             ECCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf             77984898859237655887875230167875300110023454441000013420002311002355702154100367
Q gi|254780615|r   77 DTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFG  156 (478)
Q Consensus        77 ~tg~~l~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfg  156 (478)
T Consensus        83 ~tg~~l~VPVG~~lLGRV~d~lG~PiDg~gpi~~~~~~pi~~~aP~~~~r~~~~e~leTGIkaID~l~pigkGQRigIfg  162 (480)
T CHL00060         83 DTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFG  162 (480)
T ss_pred             ECCCCEEEEECHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHCCCCCCCCCEEEEEC
T ss_conf             58995498728533168788888835788998766503256789985555677861102704443125400366887656


Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHH
Q ss_conf             56666248999999988505788526876216434599999985424420012223444332316999717668967877
Q gi|254780615|r  157 GAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARS  236 (478)
Q Consensus       157 g~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~  236 (478)
T Consensus       163 gaGvGKTvLl~eli~niak~~~~v~V~a~IGER~RE~~e~~~e~~e~gvl~-----~~~~~~s~~vlV~~~~depp~~R~  237 (480)
T CHL00060        163 GAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVIN-----EQNIAESKVALVYGQMNEPPGARM  237 (480)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCC-----CCCCCCEEEEEEEECCCCCHHHHH
T ss_conf             899887899999996120037988999996677367999999998718553-----355443048999735678768899


Q ss_pred             HHHHHHHHHHHHHHHC-CCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf             7777787768999866-996799971559998760124553114410110122356665788876317776532566654
Q gi|254780615|r  237 RVALTGLTVAEHFRDQ-GQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAI  315 (478)
Q Consensus       237 ~~~~~a~tiAEyfrd~-g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV  315 (478)
T Consensus       238 ~~~~~a~tiAEyFRd~~~~dVLl~~D~ltR~A~A~REIslllge~P~~~GYppslf~~l~~L~ER~~~~~~GSITa~~~V  317 (480)
T CHL00060        238 RVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAV  317 (480)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf             99999888999998748970899954628999888789986279998667896488887788886327888741567789


Q ss_pred             EECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             30476644105899997503425641156631886753223554311162012899999999999999989989999997
Q gi|254780615|r  316 YVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAI  395 (478)
Q Consensus       316 ~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~  395 (478)
T Consensus       318 ~v~~DD~tdPip~~~~silDg~ivLsr~La~~g~yPAID~l~S~Sr~m~p~iv~~~H~~~a~~v~~~L~~Y~el~diIai  397 (480)
T CHL00060        318 YVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAI  397 (480)
T ss_pred             EECCCCCCCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             70377666761455522125149983658878998973752010004797648999999999999999998999999997


Q ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHH
Q ss_conf             36556998899999999999998349971100005789736159999999999976764468978976418999998877
Q gi|254780615|r  396 LGMDELSEEDKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVGSIDEAVKKA  475 (478)
Q Consensus       396 ~g~~~l~~~~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~~d~~pe~~~~~~g~i~e~~~k~  475 (478)
T Consensus       398 lG~deLs~~dk~~v~rar~l~~fl~Qpf~~~e~ftg~~g~~v~l~~t~~~~~~il~g~~d~~~e~~~~~~g~~~~~~~k~  477 (480)
T CHL00060        398 LGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKA  477 (480)
T ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHH
T ss_conf             58642798899999999999999658522345415999538609999999999848987779978963046699999998


Q ss_pred             HCC
Q ss_conf             439
Q gi|254780615|r  476 EVI  478 (478)
Q Consensus       476 ~~~  478 (478)
T Consensus       478 ~~~  480 (480)
T CHL00060        478 ANL  480 (480)
T ss_pred             HCC
T ss_conf             429