HHsearch alignment for GI: 254780615 and conserved domain: CHL00060
>CHL00060 atpB ATP synthase CF1 beta subunit.
Probab=100.00 E-value=0 Score=1146.78 Aligned_cols=471 Identities=65% Similarity=1.016 Sum_probs=450.4
Q ss_pred CCCCCCCCEEEEEEECCEEEEEECC-CCCCCCCEEEECCCC-----CEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEE
Q ss_conf 6456534138999955789998166-652314189981699-----5599999987089879999814878887888889
Q gi|254780615|r 3 TKAKTESVGRIQQIMGAVVDVVFVN-SLPPIFSSLETSDKG-----SRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVI 76 (478)
Q Consensus 3 ~~~~~~~~GrV~~V~G~vvev~g~~-~~~~i~~~i~~~~~g-----~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~ 76 (478)
T Consensus 3 ~~~~~k~~GrV~~V~G~VVdv~fp~~~lp~i~~~l~~~~~~~~g~~~~~~~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~ 82 (480)
T CHL00060 3 STLEKKNLGRITQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVI 82 (480)
T ss_pred CCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHEEEECCCCCCCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEE
T ss_conf 76654676089999932699993787742144432424778777644189999999469979999656877889989999
Q ss_pred ECCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 77984898859237655887875230167875300110023454441000013420002311002355702154100367
Q gi|254780615|r 77 DTGTQITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFG 156 (478)
Q Consensus 77 ~tg~~l~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfg 156 (478)
T Consensus 83 ~tg~~l~VPVG~~lLGRV~d~lG~PiDg~gpi~~~~~~pi~~~aP~~~~r~~~~e~leTGIkaID~l~pigkGQRigIfg 162 (480)
T CHL00060 83 DTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFG 162 (480)
T ss_pred ECCCCEEEEECHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHCCCCCCCCCEEEEEC
T ss_conf 58995498728533168788888835788998766503256789985555677861102704443125400366887656
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHH
Q ss_conf 56666248999999988505788526876216434599999985424420012223444332316999717668967877
Q gi|254780615|r 157 GAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARS 236 (478)
Q Consensus 157 g~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~ 236 (478)
T Consensus 163 gaGvGKTvLl~eli~niak~~~~v~V~a~IGER~RE~~e~~~e~~e~gvl~-----~~~~~~s~~vlV~~~~depp~~R~ 237 (480)
T CHL00060 163 GAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVIN-----EQNIAESKVALVYGQMNEPPGARM 237 (480)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCC-----CCCCCCEEEEEEEECCCCCHHHHH
T ss_conf 899887899999996120037988999996677367999999998718553-----355443048999735678768899
Q ss_pred HHHHHHHHHHHHHHHC-CCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 7777787768999866-996799971559998760124553114410110122356665788876317776532566654
Q gi|254780615|r 237 RVALTGLTVAEHFRDQ-GQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAI 315 (478)
Q Consensus 237 ~~~~~a~tiAEyfrd~-g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV 315 (478)
T Consensus 238 ~~~~~a~tiAEyFRd~~~~dVLl~~D~ltR~A~A~REIslllge~P~~~GYppslf~~l~~L~ER~~~~~~GSITa~~~V 317 (480)
T CHL00060 238 RVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAV 317 (480)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 99999888999998748970899954628999888789986279998667896488887788886327888741567789
Q ss_pred EECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 30476644105899997503425641156631886753223554311162012899999999999999989989999997
Q gi|254780615|r 316 YVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAI 395 (478)
Q Consensus 316 ~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~ 395 (478)
T Consensus 318 ~v~~DD~tdPip~~~~silDg~ivLsr~La~~g~yPAID~l~S~Sr~m~p~iv~~~H~~~a~~v~~~L~~Y~el~diIai 397 (480)
T CHL00060 318 YVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAI 397 (480)
T ss_pred EECCCCCCCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 70377666761455522125149983658878998973752010004797648999999999999999998999999997
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHH
Q ss_conf 36556998899999999999998349971100005789736159999999999976764468978976418999998877
Q gi|254780615|r 396 LGMDELSEEDKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPELAFYMVGSIDEAVKKA 475 (478)
Q Consensus 396 ~g~~~l~~~~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~~d~~pe~~~~~~g~i~e~~~k~ 475 (478)
T Consensus 398 lG~deLs~~dk~~v~rar~l~~fl~Qpf~~~e~ftg~~g~~v~l~~t~~~~~~il~g~~d~~~e~~~~~~g~~~~~~~k~ 477 (480)
T CHL00060 398 LGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFYLVGNIDEATAKA 477 (480)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHH
T ss_conf 58642798899999999999999658522345415999538609999999999848987779978963046699999998
Q ss_pred HCC
Q ss_conf 439
Q gi|254780615|r 476 EVI 478 (478)
Q Consensus 476 ~~~ 478 (478)
T Consensus 478 ~~~ 480 (480)
T CHL00060 478 ANL 480 (480)
T ss_pred HCC
T ss_conf 429