HHsearch alignment for GI: 254780615 and conserved domain: COG0056

>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion].
Probab=100.00  E-value=0  Score=813.34  Aligned_cols=427  Identities=25%  Similarity=0.380  Sum_probs=399.6

Q ss_pred             CCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEE
Q ss_conf             64565341389999557899981666523141899816995599999987089879999814878887888889779848
Q gi|254780615|r    3 TKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQI   82 (478)
Q Consensus         3 ~~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l   82 (478)
T Consensus        21 ~~~~~~~~g~V~sv~DgIa~v~Gl~~~--~~~E~~ef~~~---v~G~alnle~d~VG~vi~g~~~~i~eG~~v~~Tg~i~   95 (504)
T COG0056          21 VEAEVKEVGTVISVGDGIARVSGLENV--MAGELVEFPGG---VKGMALNLEEDSVGAVILGDYSDIKEGDEVKRTGRIL   95 (504)
T ss_pred             HHHHHHCCCEEEEEECCEEEEECCCHH--HCCCEEEECCC---CEEEEEECCCCCEEEEEECCCCCCCCCCEEEEECCEE
T ss_conf             344321164499972546999447435--32845991699---3799985032424699966976645786788507568


Q ss_pred             EEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCH
Q ss_conf             98859237655887875230167875300110023454441000013420002311002355702154100367566662
Q gi|254780615|r   83 TVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGK  162 (478)
Q Consensus        83 ~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGK  162 (478)
T Consensus        96 ~Vpvg~~llGRVVn~lG~pidgkg~i~~~~~~~~e~~Apgv~~RksV~ePlqTGikaIDamiPIGRGQRELIIGDRQTGK  175 (504)
T COG0056          96 EVPVGEELLGRVVDALGNPIDGKGPIDATKTRPVEKKAPGVMDRKSVNEPLQTGIKAIDALIPIGRGQRELIIGDRQTGK  175 (504)
T ss_pred             EEECCHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
T ss_conf             87635665140566889826898975423357330207850304423833442057776405657883378751576783


Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             48999999988505788526876216434599999985424420012223444332316999717668967877777778
Q gi|254780615|r  163 TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTG  242 (478)
Q Consensus       163 T~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a  242 (478)
T Consensus       176 TaIAidtIiN-Qk~~~v~CIYVAIGQK~stva~vv~tL~e------------~gAm~yTiVV~AsASd~a~lqYLaPy~g  242 (504)
T COG0056         176 TAIAIDTIIN-QKGSGVKCIYVAIGQKRSTVANVVRTLEE------------HGAMDYTIVVAASASDSAPLQYLAPYAG  242 (504)
T ss_pred             CHHHHHHHHH-CCCCCCEEEEEECCCCHHHHHHHHHHHHH------------CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf             1102788983-55689479999815437789999999997------------5975133999814776235555302255


Q ss_pred             HHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC----CCCEEEEEEEEEC
Q ss_conf             776899986699679997155999876012455311441011012235666578887631777----6532566654304
Q gi|254780615|r  243 LTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL----KGSITSVQAIYVP  318 (478)
Q Consensus       243 ~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~----~GSIT~~~tV~~~  318 (478)
T Consensus       243 ~a~aE~f~~~G~dvLIVyDDLsKhA~AYReiSLLlrRPPGREAyPGDVFYlHSrLLERAakl~~e~g~GSiTALPIIETq  322 (504)
T COG0056         243 CAMAEYFRDNGKDVLIVYDDLSKHAVAYREISLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSITALPIIETQ  322 (504)
T ss_pred             HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC
T ss_conf             58899998659748999607418899999999983699986578886400117999998862024588724751168861


Q ss_pred             CCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             76644105899997503425641156631886753223554311162012899999999999999989989999997365
Q gi|254780615|r  319 ADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGM  398 (478)
Q Consensus       319 ~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~  398 (478)
T Consensus       323 agDvSAyIpTNVISITDGQIfl~t~LFn~G~rPAInvGlSVSRvG-ssAQ~kamkkvag~lrl~laqYrel~afsqf-~s  400 (504)
T COG0056         323 AGDVSAYIPTNVISITDGQIFLETDLFNAGIRPAINVGLSVSRVG-SAAQIKAMKKVAGSLRLILAQYRELEAFSQF-GS  400 (504)
T ss_pred             CCCEEEECCCCEEEECCCCEEEEHHHHHCCCCCCCCCCCEEECCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_conf             686623403545884077078506466468885325784265165-1889999999987899999999989998754-00


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf             56998899999999999998349971100005789736159999999999976764468978
Q gi|254780615|r  399 DELSEEDKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPEL  460 (478)
Q Consensus       399 ~~l~~~~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~~d~~pe~  460 (478)
T Consensus       401 -dLd~~T~~~l~~G~r~~ellkQ~~~----------~p~sv~~qv~il~a~~~g~ld~v~v~  451 (504)
T COG0056         401 -DLDKATRKQLERGKRLTELLKQPQY----------SPLSVEEQVLILYAGTNGYLDDVPVE  451 (504)
T ss_pred             -HHCHHHHHHHHCCHHHHHHHCCCCC----------CCCCHHHHHHHHHHHHCCCCCCCCHH
T ss_conf             -2179899999713799999667788----------87538899999999873765678567