HHsearch alignment for GI: 254780615 and conserved domain: COG0056
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion].
Probab=100.00 E-value=0 Score=813.34 Aligned_cols=427 Identities=25% Similarity=0.380 Sum_probs=399.6
Q ss_pred CCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEE
Q ss_conf 64565341389999557899981666523141899816995599999987089879999814878887888889779848
Q gi|254780615|r 3 TKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQI 82 (478)
Q Consensus 3 ~~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l 82 (478)
T Consensus 21 ~~~~~~~~g~V~sv~DgIa~v~Gl~~~--~~~E~~ef~~~---v~G~alnle~d~VG~vi~g~~~~i~eG~~v~~Tg~i~ 95 (504)
T COG0056 21 VEAEVKEVGTVISVGDGIARVSGLENV--MAGELVEFPGG---VKGMALNLEEDSVGAVILGDYSDIKEGDEVKRTGRIL 95 (504)
T ss_pred HHHHHHCCCEEEEEECCEEEEECCCHH--HCCCEEEECCC---CEEEEEECCCCCEEEEEECCCCCCCCCCEEEEECCEE
T ss_conf 344321164499972546999447435--32845991699---3799985032424699966976645786788507568
Q ss_pred EEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCH
Q ss_conf 98859237655887875230167875300110023454441000013420002311002355702154100367566662
Q gi|254780615|r 83 TVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGK 162 (478)
Q Consensus 83 ~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGK 162 (478)
T Consensus 96 ~Vpvg~~llGRVVn~lG~pidgkg~i~~~~~~~~e~~Apgv~~RksV~ePlqTGikaIDamiPIGRGQRELIIGDRQTGK 175 (504)
T COG0056 96 EVPVGEELLGRVVDALGNPIDGKGPIDATKTRPVEKKAPGVMDRKSVNEPLQTGIKAIDALIPIGRGQRELIIGDRQTGK 175 (504)
T ss_pred EEECCHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
T ss_conf 87635665140566889826898975423357330207850304423833442057776405657883378751576783
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 48999999988505788526876216434599999985424420012223444332316999717668967877777778
Q gi|254780615|r 163 TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTG 242 (478)
Q Consensus 163 T~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a 242 (478)
T Consensus 176 TaIAidtIiN-Qk~~~v~CIYVAIGQK~stva~vv~tL~e------------~gAm~yTiVV~AsASd~a~lqYLaPy~g 242 (504)
T COG0056 176 TAIAIDTIIN-QKGSGVKCIYVAIGQKRSTVANVVRTLEE------------HGAMDYTIVVAASASDSAPLQYLAPYAG 242 (504)
T ss_pred CHHHHHHHHH-CCCCCCEEEEEECCCCHHHHHHHHHHHHH------------CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 1102788983-55689479999815437789999999997------------5975133999814776235555302255
Q ss_pred HHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC----CCCEEEEEEEEEC
Q ss_conf 776899986699679997155999876012455311441011012235666578887631777----6532566654304
Q gi|254780615|r 243 LTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL----KGSITSVQAIYVP 318 (478)
Q Consensus 243 ~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~----~GSIT~~~tV~~~ 318 (478)
T Consensus 243 ~a~aE~f~~~G~dvLIVyDDLsKhA~AYReiSLLlrRPPGREAyPGDVFYlHSrLLERAakl~~e~g~GSiTALPIIETq 322 (504)
T COG0056 243 CAMAEYFRDNGKDVLIVYDDLSKHAVAYREISLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSITALPIIETQ 322 (504)
T ss_pred HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC
T ss_conf 58899998659748999607418899999999983699986578886400117999998862024588724751168861
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 76644105899997503425641156631886753223554311162012899999999999999989989999997365
Q gi|254780615|r 319 ADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGM 398 (478)
Q Consensus 319 ~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~ 398 (478)
T Consensus 323 agDvSAyIpTNVISITDGQIfl~t~LFn~G~rPAInvGlSVSRvG-ssAQ~kamkkvag~lrl~laqYrel~afsqf-~s 400 (504)
T COG0056 323 AGDVSAYIPTNVISITDGQIFLETDLFNAGIRPAINVGLSVSRVG-SAAQIKAMKKVAGSLRLILAQYRELEAFSQF-GS 400 (504)
T ss_pred CCCEEEECCCCEEEECCCCEEEEHHHHHCCCCCCCCCCCEEECCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_conf 686623403545884077078506466468885325784265165-1889999999987899999999989998754-00
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 56998899999999999998349971100005789736159999999999976764468978
Q gi|254780615|r 399 DELSEEDKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYDHLPEL 460 (478)
Q Consensus 399 ~~l~~~~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~~d~~pe~ 460 (478)
T Consensus 401 -dLd~~T~~~l~~G~r~~ellkQ~~~----------~p~sv~~qv~il~a~~~g~ld~v~v~ 451 (504)
T COG0056 401 -DLDKATRKQLERGKRLTELLKQPQY----------SPLSVEEQVLILYAGTNGYLDDVPVE 451 (504)
T ss_pred -HHCHHHHHHHHCCHHHHHHHCCCCC----------CCCCHHHHHHHHHHHHCCCCCCCCHH
T ss_conf -2179899999713799999667788----------87538899999999873765678567