HHsearch alignment for GI: 254780615 and conserved domain: COG0468
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair].
Probab=96.96 E-value=0.0093 Score=36.98 Aligned_cols=174 Identities=19% Similarity=0.237 Sum_probs=92.6
Q ss_pred CCCCCCCCCCCCCCCCCCC--CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-EECCCHHHHHHHHHHHHHC
Q ss_conf 0134200023110023557--021541003675666624899999998850578852687-6216434599999985424
Q gi|254780615|r 127 STDASILTTGIKVIDLISP--YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGERTREGNDLYHEMIDS 203 (478)
Q Consensus 127 ~~i~e~L~TGIkaID~l~p--ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~-~iGER~rEv~e~~~e~~~~ 203 (478)
T Consensus 36 ~~~~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~-g~~a~fIDtE~--~l~p~r~~~-l~~~ 111 (279)
T COG0468 36 REDIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKP-GGKAAFIDTEH--ALDPERAKQ-LGVD 111 (279)
T ss_pred HHCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC-CCEEEEEECCC--CCCHHHHHH-HHHH
T ss_conf 6436601655055787746886553589984688765466899998886537-98089995899--989999999-8875
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC--CEEEEEECHHHHHHHH-HHHHHHHCCC
Q ss_conf 420012223444332316999717668967877777778776899986699--6799971559998760-1245531144
Q gi|254780615|r 204 KVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQ--DVLFFVDNIFRFTQAN-SEISALLGRI 280 (478)
Q Consensus 204 ~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~--dVll~~Dsltr~a~A~-rEisl~~g~~ 280 (478)
T Consensus 112 ~---------------~d~l~v~~~~~--------~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~~~~-------- 160 (279)
T COG0468 112 L---------------LDNLLVSQPDT--------GEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIE-------- 160 (279)
T ss_pred H---------------HCCEEEECCCC--------HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHCC--------
T ss_conf 4---------------21536866897--------7999999999987546887889982574346365548--------
Q ss_pred CHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE---CCC---CCCCHHHHHHHHHCCCE
Q ss_conf 1011012235666578887631777653256665430---476---64410589999750342
Q gi|254780615|r 281 PSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYV---PAD---DLTDPAPATSFTHLDAT 337 (478)
Q Consensus 281 P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~---~~d---D~~dpi~~~~~si~Dg~ 337 (478)
T Consensus 161 d~~~~~~~r~ls~~l~~L~~~a~~~~--~~vi~~NQv~~k~~~~f~~~~~~~GG~~L~~~as~ 221 (279)
T COG0468 161 DGHLGLRARLLSKALRKLTRLANKYN--TAVIFTNQVRAKIGVMFGDPETTTGGNALKFYASV 221 (279)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCC--CEEEEECCEEEECCCCCCCCCCCCCCHHHHHHHHE
T ss_conf 53489999999999999999999749--58999784034067666886658772388755324