HHsearch alignment for GI: 254780615 and conserved domain: COG0468

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair].
Probab=96.96  E-value=0.0093  Score=36.98  Aligned_cols=174  Identities=19%  Similarity=0.237  Sum_probs=92.6

Q ss_pred             CCCCCCCCCCCCCCCCCCC--CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-EECCCHHHHHHHHHHHHHC
Q ss_conf             0134200023110023557--021541003675666624899999998850578852687-6216434599999985424
Q gi|254780615|r  127 STDASILTTGIKVIDLISP--YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGERTREGNDLYHEMIDS  203 (478)
Q Consensus       127 ~~i~e~L~TGIkaID~l~p--ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~-~iGER~rEv~e~~~e~~~~  203 (478)
T Consensus        36 ~~~~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~-g~~a~fIDtE~--~l~p~r~~~-l~~~  111 (279)
T COG0468          36 REDIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKP-GGKAAFIDTEH--ALDPERAKQ-LGVD  111 (279)
T ss_pred             HHCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC-CCEEEEEECCC--CCCHHHHHH-HHHH
T ss_conf             6436601655055787746886553589984688765466899998886537-98089995899--989999999-8875


Q ss_pred             CCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC--CEEEEEECHHHHHHHH-HHHHHHHCCC
Q ss_conf             420012223444332316999717668967877777778776899986699--6799971559998760-1245531144
Q gi|254780615|r  204 KVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQ--DVLFFVDNIFRFTQAN-SEISALLGRI  280 (478)
Q Consensus       204 ~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~--dVll~~Dsltr~a~A~-rEisl~~g~~  280 (478)
T Consensus       112 ~---------------~d~l~v~~~~~--------~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~~~~--------  160 (279)
T COG0468         112 L---------------LDNLLVSQPDT--------GEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIE--------  160 (279)
T ss_pred             H---------------HCCEEEECCCC--------HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHCC--------
T ss_conf             4---------------21536866897--------7999999999987546887889982574346365548--------


Q ss_pred             CHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEE---CCC---CCCCHHHHHHHHHCCCE
Q ss_conf             1011012235666578887631777653256665430---476---64410589999750342
Q gi|254780615|r  281 PSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYV---PAD---DLTDPAPATSFTHLDAT  337 (478)
Q Consensus       281 P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~---~~d---D~~dpi~~~~~si~Dg~  337 (478)
T Consensus       161 d~~~~~~~r~ls~~l~~L~~~a~~~~--~~vi~~NQv~~k~~~~f~~~~~~~GG~~L~~~as~  221 (279)
T COG0468         161 DGHLGLRARLLSKALRKLTRLANKYN--TAVIFTNQVRAKIGVMFGDPETTTGGNALKFYASV  221 (279)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCC--CEEEEECCEEEECCCCCCCCCCCCCCHHHHHHHHE
T ss_conf             53489999999999999999999749--58999784034067666886658772388755324