HHsearch alignment for GI: 254780615 and conserved domain: COG2256

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair].
Probab=96.50  E-value=0.013  Score=35.99  Aligned_cols=80  Identities=21%  Similarity=0.385  Sum_probs=47.7

Q ss_pred             CCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             21541003675666624899999998850578852687621643459999998542442001222344433231699971
Q gi|254780615|r  147 QKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYG  226 (478)
Q Consensus       147 g~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~  226 (478)
T Consensus        46 ~~l~SmIl~GPPG~GKTTlA~liA~~---~~~~f~~~sAv~~gvkdlr~i------------------------------   92 (436)
T COG2256          46 GHLHSMILWGPPGTGKTTLARLIAGT---TNAAFEALSAVTSGVKDLREI------------------------------   92 (436)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHH---HCCCEEEECCCCCCHHHHHHH------------------------------
T ss_conf             99860577789998888999999876---177669951523467999999------------------------------


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHH
Q ss_conf             7668967877777778776899986699679997155999876012455
Q gi|254780615|r  227 QMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISA  275 (478)
Q Consensus       227 ~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl  275 (478)
T Consensus        93 ----------------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL  125 (436)
T COG2256          93 ----------------IEEARKNRLLGRRTILFLDEIHRFNKAQQDALL  125 (436)
T ss_pred             ----------------HHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHH
T ss_conf             ----------------999999872588349987225333744565510