HHsearch alignment for GI: 254780615 and conserved domain: COG2256
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair].
Probab=96.50 E-value=0.013 Score=35.99 Aligned_cols=80 Identities=21% Similarity=0.385 Sum_probs=47.7
Q ss_pred CCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 21541003675666624899999998850578852687621643459999998542442001222344433231699971
Q gi|254780615|r 147 QKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYG 226 (478)
Q Consensus 147 g~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~ 226 (478)
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~---~~~~f~~~sAv~~gvkdlr~i------------------------------ 92 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGT---TNAAFEALSAVTSGVKDLREI------------------------------ 92 (436)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH---HCCCEEEECCCCCCHHHHHHH------------------------------
T ss_conf 99860577789998888999999876---177669951523467999999------------------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHH
Q ss_conf 7668967877777778776899986699679997155999876012455
Q gi|254780615|r 227 QMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISA 275 (478)
Q Consensus 227 ~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl 275 (478)
T Consensus 93 ----------------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL 125 (436)
T COG2256 93 ----------------IEEARKNRLLGRRTILFLDEIHRFNKAQQDALL 125 (436)
T ss_pred ----------------HHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHH
T ss_conf ----------------999999872588349987225333744565510