HHsearch alignment for GI: 254780615 and conserved domain: COG2874
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=95.48 E-value=0.2 Score=28.28 Aligned_cols=162 Identities=19% Similarity=0.210 Sum_probs=90.2
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE-
Q ss_conf 1541003675666624899999998850578852687621643459999998542442001222344433231699971-
Q gi|254780615|r 148 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYG- 226 (478)
Q Consensus 148 ~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~- 226 (478)
T Consensus 27 ~GsL~lIEGd~~tGKSvLsqr~~YG~L--~~g~~v~yvsTe~--T~refi~qm~sl~ydv~--~~----~l~G~l~~~~~ 96 (235)
T COG2874 27 VGSLILIEGDNGTGKSVLSQRFAYGFL--MNGYRVTYVSTEL--TVREFIKQMESLSYDVS--DF----LLSGRLLFFPV 96 (235)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH--HCCCEEEEEEECH--HHHHHHHHHHHCCCCCH--HH----HHCCEEEEEEE
T ss_conf 676999988898548899999999887--0895489998403--59999998886388716--87----75062689993
Q ss_pred ---CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCC
Q ss_conf ---76689678777777787768999866996799971559998760124553114410110122356665788876317
Q gi|254780615|r 227 ---QMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITT 303 (478)
Q Consensus 227 ---~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~ 303 (478)
T Consensus 97 ~~~~~~~~~~~~~~~-L--~~l~~~~k~~~~dViI-IDSls~~~~~~~~~~vl------------~fm~~~r~l~d---- 156 (235)
T COG2874 97 NLEPVNWGRRSARKL-L--DLLLEFIKRWEKDVII-IDSLSAFATYDSEDAVL------------NFMTFLRKLSD---- 156 (235)
T ss_pred CCCCCCCCHHHHHHH-H--HHHHHHHHHHCCCEEE-EECCCHHHHCCCHHHHH------------HHHHHHHHHHH----
T ss_conf 245422573778999-9--9997557752377899-95343776526499999------------99999999872----
Q ss_pred CCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHH
Q ss_conf 77653256665430476644105899997503425641156
Q gi|254780615|r 304 TLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQI 344 (478)
Q Consensus 304 ~~~GSIT~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~l 344 (478)
T Consensus 157 --~gK-vIilTv--hp~~l~e~~~~rirs~~d~~l~L~~~~ 192 (235)
T COG2874 157 --LGK-VIILTV--HPSALDEDVLTRIRSACDVYLRLRLEE 192 (235)
T ss_pred --CCC-EEEEEE--CHHHCCHHHHHHHHHHHHEEEEEEHHH
T ss_conf --897-899994--734337899999987520258987023