HHsearch alignment for GI: 254780615 and conserved domain: PRK04328
>PRK04328 hypothetical protein; Provisional.
Probab=98.54 E-value=1.5e-06 Score=61.92 Aligned_cols=195 Identities=15% Similarity=0.177 Sum_probs=108.6
Q ss_pred CCCCCCCCCCCCCCC--CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 200023110023557--021541003675666624899999998850578852687621643459999998542442001
Q gi|254780615|r 131 SILTTGIKVIDLISP--YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNID 208 (478)
Q Consensus 131 e~L~TGIkaID~l~p--ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~ 208 (478)
T Consensus 4 eRv~TGI~gLD~lL~GGlp~gs~~Lv~G~pGtGKT~la~qFl~~g~~-~GE~~lyis~eE~~~~l~~---~~~~~G~d~~ 79 (250)
T PRK04328 4 KRVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ-MGEPGIYVALEEHPVQVRR---NMAQFGWDVR 79 (250)
T ss_pred CEECCCCHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH-CCCCEEEEEEECCHHHHHH---HHHHCCCCHH
T ss_conf 11035856678751599879969999828999989999999999987-6997799997279999999---9998099868
Q ss_pred CCCCCCCCCCCEEEEEEECC-CC---CHHHHHHH------HHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHC
Q ss_conf 22234443323169997176-68---96787777------7778776899986699679997155999876012455311
Q gi|254780615|r 209 PRKNNGSAVGSKCSLLYGQM-NE---PPGARSRV------ALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLG 278 (478)
Q Consensus 209 ~~~~~~~~~~~~tv~v~~~~-~~---~~~~r~~~------~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g 278 (478)
T Consensus 80 --~~~~~g---~l~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~-rvVIDSit~l~~~--------- 144 (250)
T PRK04328 80 --KYEEEG---KFAIVDAFTGGIGEAAEREKYVVKDPDDVRELIDVLRQAIRDIGAK-RVVIDSVSTLYLT--------- 144 (250)
T ss_pred --HHHHCC---CEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC-EEEEECCHHHHHC---------
T ss_conf --986569---7799851233334200000101368535999999999999851898-8999370787745---------
Q ss_pred CCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCC--CCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCC
Q ss_conf 4410110122356665788876317776532566654304766--44105899997503425641156631886753223
Q gi|254780615|r 279 RIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADD--LTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPL 356 (478)
Q Consensus 279 ~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD--~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~ 356 (478)
T Consensus 145 ~~~~~r----~~l~~l~~~l~~~------g~Ttll~~e~~~~~~~~~~~~---ve~~~DgvI~L~~~~~~~~~~R~l~I~ 211 (250)
T PRK04328 145 KPAVAR----SIVMQLKRVLAGL------GCTSIFVSQVSVGERGFGGPG---VEHAVDGIIRLDLDEIDGELKRSLIVW 211 (250)
T ss_pred CHHHHH----HHHHHHHHHHHHC------CCEEEEEECCCCCCCCCCCCC---EEEEEEEEEEEEEECCCCEEEEEEEEE
T ss_conf 858899----9999999999868------986999971003656667786---589998999988871399799999999
Q ss_pred C
Q ss_conf 5
Q gi|254780615|r 357 D 357 (478)
Q Consensus 357 ~ 357 (478)
T Consensus 212 K 212 (250)
T PRK04328 212 K 212 (250)
T ss_pred E
T ss_conf 8