HHsearch alignment for GI: 254780615 and conserved domain: PRK04841
>PRK04841 transcriptional regulator MalT; Provisional.
Probab=91.50 E-value=0.99 Score=23.67 Aligned_cols=136 Identities=13% Similarity=0.083 Sum_probs=68.4
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 44410000134200023110023557021541003675666624899999998850578852687621643459999998
Q gi|254780615|r 120 SPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHE 199 (478)
Q Consensus 120 ~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e 199 (478)
T Consensus 13 ~~~~v~R~rL~~~L~~----------~~~~~l~lv~APaG~GKTtl~a~w~~~----~~~-~~Wlsld~~d~~~~~f~~~ 77 (903)
T PRK04841 13 LDHTVVRERLLAKLSG----------ANNYRLVLVRSPAGYGKTTLASQWAAG----KNN-VGWYSLDESDNQPERFASY 77 (903)
T ss_pred CCCCCCCHHHHHHHHH----------HCCCCEEEEECCCCCCHHHHHHHHHHC----CCC-EEEEECCCCCCCHHHHHHH
T ss_conf 8782554779999985----------158997999779998899999999834----998-5998588544899999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH--HHHHHHHHHH
Q ss_conf 54244200122234443323169997176689678777777787768999866996799971559998--7601245531
Q gi|254780615|r 200 MIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFT--QANSEISALL 277 (478)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a--~A~rEisl~~ 277 (478)
T Consensus 78 l~~al~~~------~~~~~~~~~~~~~~~~~~~~~~~---~--~~l~~~l~~~~~~~~lvlDD~h~i~~~~~~~~l~~Ll 146 (903)
T PRK04841 78 LIAALQQA------TNGHCSKSEALAEKRQYASLTSL---F--AQLFIELSDWHQPLYLVLDDYHLITNPEIHEAMRFFL 146 (903)
T ss_pred HHHHHHHH------CCCCCCHHHHCCCCCCCCCHHHH---H--HHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 99999985------65433112311355665549999---9--9999997558998699986836488868999999999
Q ss_pred CCCC
Q ss_conf 1441
Q gi|254780615|r 278 GRIP 281 (478)
Q Consensus 278 g~~P 281 (478)
T Consensus 147 ~~~p 150 (903)
T PRK04841 147 RHQP 150 (903)
T ss_pred HHCC
T ss_conf 8389