HHsearch alignment for GI: 254780615 and conserved domain: PRK05541

Probab=95.85  E-value=0.076  Score=30.99  Aligned_cols=90  Identities=24%  Similarity=0.253  Sum_probs=64.0

Q ss_pred             CCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             21541003675666624899999998850578852687621643459999998542442001222344433231699971
Q gi|254780615|r  147 QKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYG  226 (478)
Q Consensus       147 g~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~  226 (478)
T Consensus         5 ~kg~viW~TGLsGSGKTTiA~~l~~~L~~--~g~~~~~LDGD~lR---~~~~----------------------------   51 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLKL--KYSNVIYLDGDELR---EIFG----------------------------   51 (176)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHH--CCCCEEEECCHHHH---HHHC----------------------------
T ss_conf             88679997899999899999999999997--59977998868999---8736----------------------------


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH
Q ss_conf             7668967877777778776899986699679997155999876
Q gi|254780615|r  227 QMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQA  269 (478)
Q Consensus       227 ~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A  269 (478)
T Consensus        52 ~~gfs~~~R~~n~~r~~~lak~l~~~g~~vIvs~isp~~~~R~   94 (176)
T PRK05541         52 HSGYDKESRIEMALKRAKLAAFLADQGMIVIVTTISMFNEIYA   94 (176)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
T ss_conf             5898999999999999999999864698036752279899999