HHsearch alignment for GI: 254780615 and conserved domain: PRK06002
>PRK06002 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=917.60 Aligned_cols=422 Identities=26% Similarity=0.404 Sum_probs=389.0
Q ss_pred CCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEE
Q ss_conf 45653413899995578999816665231418998169955999999870898799998148788878888897798489
Q gi|254780615|r 4 KAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQIT 83 (478)
Q Consensus 4 ~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~ 83 (478)
T Consensus 21 ~p~~r~~G~V~~V~g~i~~v~GL~~~~~~Ge~~~i~~~~~~~~aeVv~~-~~~~v~l~p~g~~~gi~~G~~V~~tg-~l~ 98 (450)
T PRK06002 21 EPLVRIGGTVSEVTPSHYRVRGLSRFVRLGDRVAIRSDGGTQLGEVVRV-DEDGVLVKPFEPRIPAGLGAAVFRKG-PLR 98 (450)
T ss_pred CCEEEEEEEEEEEECCEEEEEECCCCCCCCCEEEEECCCCCEEEEEEEE-ECCCEEEEECCCCCCCCCCCEEEECC-CEE
T ss_conf 9823456899999381899998866677798899927997179999986-37818999876866688999898479-804
Q ss_pred EECCHHHHHHHHHHHHHHCCCCCCCCC-HHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCH
Q ss_conf 885923765588787523016787530-0110023454441000013420002311002355702154100367566662
Q gi|254780615|r 84 VPVGEATLGRIMNVIGEPVDDQGAIIS-SEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGK 162 (478)
Q Consensus 84 VpVG~~lLGRViD~lG~PLDg~g~i~~-~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGK 162 (478)
T Consensus 99 v~vg~~lLGRVvD~lG~PlDgkgpl~~~~~~~pi~~~~p~~~~R~~i~epL~TGIkaID~l~pigrGQR~gIfgg~GvGK 178 (450)
T PRK06002 99 IRPDPSWKGRVINALGEPIDGKGPLAPGTRPMSIDATAPPAMRRARVDTPLRTGVRVIDIFTPLCAGQRIGIFAGSGVGK 178 (450)
T ss_pred ECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCH
T ss_conf 44680004787378886578999988776135156899681212788876631031334214601487777426899987
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 48999999988505788526876216434599999985424420012223444332316999717668967877777778
Q gi|254780615|r 163 TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTG 242 (478)
Q Consensus 163 T~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a 242 (478)
T Consensus 179 TtLl~~i~~~---~~~d~vV~~lIGeRgrEv~ef~e~~l------------~-~~l~~svvV~atsd~~p~~r~~a~~~a 242 (450)
T PRK06002 179 STLLAMLARA---DAFDTVVVALVGERGREVREFLEDTL------------A-DHLSKAVAVVATGDESPMMRRLAPKTA 242 (450)
T ss_pred HHHHHHHHHH---CCCCEEEEEEEEEEHHHHHHHHHHHH------------H-CCCCEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 5999999862---58987999986474899999999876------------4-220005999705889828876556554
Q ss_pred HHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCC--CCCCEEEEEEEEECCC
Q ss_conf 77689998669967999715599987601245531144101101223566657888763177--7653256665430476
Q gi|254780615|r 243 LTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTT--LKGSITSVQAIYVPAD 320 (478)
Q Consensus 243 ~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~--~~GSIT~~~tV~~~~d 320 (478)
T Consensus 243 ~aiAEyfrd~G~~VLli~DslTr~A~A~REisl~~gepP~r~gYp~~vf~~l~~LlERag~~~~~~GSITal~~V~~~~d 322 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVDGD 322 (450)
T ss_pred HHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCC
T ss_conf 43799999679967999826178888999999875899975677832776606888762257778730688888871388
Q ss_pred CCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 64410589999750342564115663188675322355431116201289999999999999998998999999736556
Q gi|254780615|r 321 DLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDE 400 (478)
Q Consensus 321 D~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~ 400 (478)
T Consensus 323 D~~~pI~d~~~silDGhIvLsr~la~~G~~PAIDv~~SvSRv~~-~~~~~~~~~~a~~~r~~la~y~e~~dli~~g~y~~ 401 (450)
T PRK06002 323 DHNDPVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISRLAK-HVWTPEQRKLVRRLKSMIARFEETRDLRLMGGYQP 401 (450)
T ss_pred CCCCCHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCCCCCH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 76775788786773549998488986799997288734201771-22429999999999999997777899999759467
Q ss_pred CCHH-HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCCCC
Q ss_conf 9988-999999999999983499711000057897361599999999999767644
Q gi|254780615|r 401 LSEE-DKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGEYD 455 (478)
Q Consensus 401 l~~~-~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~~d 455 (478)
T Consensus 402 g~d~~~d~ai~~~~~i~~fL~Q~~~ep~----------s-~d~~~~l~~~~~g~~~ 446 (450)
T PRK06002 402 GADPELDQAVDLVPRIYEALQQSPGDPP----------S-DDPFADLAAALKGAAQ 446 (450)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCC----------C-HHHHHHHHHHHHHHHH
T ss_conf 9999999999826999998389989998----------7-7899999998532130