HHsearch alignment for GI: 254780615 and conserved domain: PRK06067
>PRK06067 flagellar accessory protein FlaH; Validated.
Probab=98.70 E-value=5.8e-07 Score=64.58 Aligned_cols=201 Identities=15% Similarity=0.115 Sum_probs=111.8
Q ss_pred CCCCCCCCCCCCCCCCCC--CCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCC
Q ss_conf 013420002311002355--702154100367566662489999999885057885268762164345999999854244
Q gi|254780615|r 127 STDASILTTGIKVIDLIS--PYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSK 204 (478)
Q Consensus 127 ~~i~e~L~TGIkaID~l~--pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~ 204 (478)
T Consensus 8 ~~~~e~i~tGi~~lD~~l~GG~p~g~~~li~G~~G~GKt~~~~~f~~~~~~~-g~~~~~~~~ee~~~---~~~~~~~~~g 83 (241)
T PRK06067 8 EEEKEIISTGNEEIDRKLGGGIPFGSLILIEGENDTGKSVLSQQFVWGALNQ-GKRGLAITTENTSK---SYLKQMESLK 83 (241)
T ss_pred CCCCCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEEECCCHH---HHHHHHHHCC
T ss_conf 4314525668755786506997799089998079988799999999999867-98299999428999---9999999839
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 20012223444332316999717668967877777778776899986699679997155999876012455311441011
Q gi|254780615|r 205 VNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAV 284 (478)
Q Consensus 205 ~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~ 284 (478)
T Consensus 84 ~dl~--~~~~~G~L~i~~~~~~~~~~~~~---~~~~ll~~l~~~v~~~~~~~-vVIDSls~l~~~~~~~~~~-------- 149 (241)
T PRK06067 84 LDIS--DFFIWGYLRIFPLNTEGFEWNSE---LAEKLLDLIIEFIKRRREEV-IIIDSLTIFATYASEDDVL-------- 149 (241)
T ss_pred CCHH--HHHHCCCCEEEECCCCCCCCCHH---HHHHHHHHHHHHHHHHCCCE-EEECCHHHHHCCCCHHHHH--------
T ss_conf 9859--99866970578324111342155---68999999999999719989-9992801754138889999--------
Q ss_pred HCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCC
Q ss_conf 01223566657888763177765325666543047664410589999750342564115663188675322355
Q gi|254780615|r 285 GYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDS 358 (478)
Q Consensus 285 gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S 358 (478)
T Consensus 150 ----~~l~~l~~l~~~------g-~tvllt~~~--~~~~~~~~~~i~~vaD~vI~Lr~~~~~g~~~R~L~V~K~ 210 (241)
T PRK06067 150 ----NFFTECKNLCDN------G-KTILITLHP--YAFSEDTLVRIRSICDVHLKLRKEQVGDRYVKVLEVVKL 210 (241)
T ss_pred ----HHHHHHHHHHHC------C-CEEEEEECC--CCCCCCCCCCEEEEEEEEEEEEEEEECCEEEEEEEEEEE
T ss_conf ----999999999968------9-889999056--764766431248998999995878439999999999991