HHsearch alignment for GI: 254780615 and conserved domain: PRK06793
>PRK06793 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=930.78 Aligned_cols=416 Identities=26% Similarity=0.390 Sum_probs=390.6
Q ss_pred CCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEE
Q ss_conf 64565341389999557899981666523141899816995599999987089879999814878887888889779848
Q gi|254780615|r 3 TKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQI 82 (478)
Q Consensus 3 ~~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l 82 (478)
T Consensus 15 ~~p~~~~~GrV~~V~g~~i~a~G~~~~iGe~c~i--~--~~~~~aeVvgf-~~~~v~l~p~~~~~gi~~G~~V~~~g~~~ 89 (432)
T PRK06793 15 ETPFYTKVGKVHSVQEQFFVAKGPKAKIGDVCFV--G--EHNVLCEVIAI-EKENNMLLPFEQTEKVCYGDSVTLIAEDV 89 (432)
T ss_pred CCCCCEEEEEEEEEECEEEEEEECCCCCCCEEEE--C--CCCEEEEEEEE-ECCEEEEEECCCCCCCCCCCEEEECCCCC
T ss_conf 6887447889999935199999379875898998--6--89818999998-58939999887877889999999799975
Q ss_pred EEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCH
Q ss_conf 98859237655887875230167875300110023454441000013420002311002355702154100367566662
Q gi|254780615|r 83 TVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGK 162 (478)
Q Consensus 83 ~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGK 162 (478)
T Consensus 90 ~vpVg~~lLGRViD~lG~PlD~~~~~~~~~~~~~~~~~~np~~R~~i~e~l~TGIraID~l~pigrGQR~gIfg~sGvGK 169 (432)
T PRK06793 90 VIPRGNHLLGKVLSANGEVLNEEAENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGK 169 (432)
T ss_pred EEECCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEECCCCCCH
T ss_conf 78889563287757896615899988877434432899883013777874004873100015612462666632689878
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 48999999988505788526876216434599999985424420012223444332316999717668967877777778
Q gi|254780615|r 163 TVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTG 242 (478)
Q Consensus 163 T~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a 242 (478)
T Consensus 170 stLl~~i~~~---~~adv~Vi~lIGeRgrEv~efi~~~l------------~~~gl~~tvvV~atsd~p~~~r~~a~~~a 234 (432)
T PRK06793 170 STLLGMIAKN---AKADINVISLVGERGREVKDFIRKEL------------GEEGMRKSVVVVATSDESHLMQLRAAKLA 234 (432)
T ss_pred HHHHHHHHHH---CCCCCEEEEEEEEECHHHHHHHHHHH------------HCCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999999872---45786579998886279999999986------------44675212788725889989999887551
Q ss_pred HHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCC
Q ss_conf 77689998669967999715599987601245531144101101223566657888763177765325666543047664
Q gi|254780615|r 243 LTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDL 322 (478)
Q Consensus 243 ~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~ 322 (478)
T Consensus 235 ~aiAEyfrd~G~~VLli~DslTr~A~A~REisl~~gepP~-~Gy~p~~~s~l~~LlERag~~~~GSITa~~tVl~~gdD~ 313 (432)
T PRK06793 235 TSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPI-GGKTLLMESYMKKLLERSGKTQKGSITGIYTVLVDGDDL 313 (432)
T ss_pred HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCC
T ss_conf 2378899866996899945678888887477885379998-988864587899999754036886357888998328866
Q ss_pred CCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 41058999975034256411566318867532235543111620128999999999999999899899999973655699
Q gi|254780615|r 323 TDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELS 402 (478)
Q Consensus 323 ~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~ 402 (478)
T Consensus 314 ~~pI~d~~~silDGhIvLsr~La~~g~yPAIDvl~SvSRv~~-~v~~~~h~~~a~~~r~~la~y~e~edli~iG~Y~~g~ 392 (432)
T PRK06793 314 NGPVPDLARGILDGHIVLKRELATLSHYPAISVLDSVSRIME-EIVSPNHWQLANEMRKILSIYKENELYFKLGTIQENA 392 (432)
T ss_pred CCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 787157677662537999675886699997288515422625-4503999999999999999999999999847976699
Q ss_pred H-H-HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHH
Q ss_conf 8-8-9999999999999834997110000578973615999999999997
Q gi|254780615|r 403 E-E-DKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLV 450 (478)
Q Consensus 403 ~-~-~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il 450 (478)
T Consensus 393 d~~~~d~a~~~~~~i~~fL~Q~~~----------e~~~~~~~~~~l~~l~ 432 (432)
T PRK06793 393 ENAYIFECKNKVEGINTFLKQGRS----------DSFQFDDIVEAMHHIV 432 (432)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCC----------CCCCHHHHHHHHHHHC
T ss_conf 858899999868999998289988----------9979999999999569