HHsearch alignment for GI: 254780615 and conserved domain: PRK07196

>PRK07196 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00  E-value=0  Score=932.95  Aligned_cols=419  Identities=24%  Similarity=0.375  Sum_probs=395.1

Q ss_pred             CCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEE
Q ss_conf             45653413899995578999816665231418998169955999999870898799998148788878888897798489
Q gi|254780615|r    4 KAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQIT   83 (478)
Q Consensus         4 ~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~   83 (478)
T Consensus        12 ~~~~r~~GrV~~i~G~~ie~~g~~~~iG~~c~I~~~~-g~~v~aEVVgf-~~~~~~L~p~~~~~Gi~~G~~V~~~g~~~~   89 (434)
T PRK07196         12 IHLARVAGRLVRVTGLLLESVGCRLAIGQRCRIESVD-ETFIEAQVVGF-DRDITYLMPFKHPGGVLGGARVFPSEQDGE   89 (434)
T ss_pred             CCCCEEEEEEEEEECCEEEEECCCCCCCCEEEEEECC-CCEEEEEEEEE-CCCEEEEEECCCCCCCCCCCEEEECCCCCE
T ss_conf             9862488899999710899980698989989998089-98889999998-199699998888778899999998899876


Q ss_pred             EECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHH
Q ss_conf             88592376558878752301678753001100234544410000134200023110023557021541003675666624
Q gi|254780615|r   84 VPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKT  163 (478)
Q Consensus        84 VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT  163 (478)
T Consensus        90 v~vg~~lLGRVvD~~G~PlDg~g~~~~~~~~~~~~~~~nPl~R~~i~e~l~TGIraID~l~pigrGQRigIfggsGvGKs  169 (434)
T PRK07196         90 LLIGDSWLGRVINGLGEPLDGKGQLGGSTPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKS  169 (434)
T ss_pred             EECCHHHCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCCCCHH
T ss_conf             77686224757767886268998888884655668999830137888721268624415577024524210147899789


Q ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             89999999885057885268762164345999999854244200122234443323169997176689678777777787
Q gi|254780615|r  164 VLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGL  243 (478)
Q Consensus       164 ~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~  243 (478)
T Consensus       170 ~Ll~~I~r~---~~advvVi~lIGeRgrEv~efi~~~~------------~~~~l~~svvv~atsd~~p~~r~~a~~~a~  234 (434)
T PRK07196        170 VLLGMITRY---TQADVVVVGLIGERGREVKEFIEHSL------------QAAGMAKSVVVAAPADESPLMRIKATELCH  234 (434)
T ss_pred             HHHHHHHHH---HCCCEEEEEECCEEHHHHHHHHHHHH------------HCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             999999897---37998999742223499999999874------------246743269998458898788889998899


Q ss_pred             HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC-CCCEEEEEEEEECCCCC
Q ss_conf             76899986699679997155999876012455311441011012235666578887631777-65325666543047664
Q gi|254780615|r  244 TVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL-KGSITSVQAIYVPADDL  322 (478)
Q Consensus       244 tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~-~GSIT~~~tV~~~~dD~  322 (478)
T Consensus       235 aiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gyp~svf~~l~~l~ERaG~~~~~GSITa~~tv~~~~dD~  314 (434)
T PRK07196        235 AIATYYRDKGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQ  314 (434)
T ss_pred             HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCC
T ss_conf             89999986798569995474688999999997568999867758438888589998521578862488888886268887


Q ss_pred             CCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             41058999975034256411566318867532235543111620128999999999999999899899999973655699
Q gi|254780615|r  323 TDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELS  402 (478)
Q Consensus       323 ~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~  402 (478)
T Consensus       315 ~dpi~d~~~silDGhivLsr~la~~G~yPaIdvl~S~SR~m~-~i~~~~~~~~a~~~r~~la~y~e~e~li~~G~Y~~G~  393 (434)
T PRK07196        315 QDPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMS-QVIGSQQAKAASLLKQCYADYMAIKPLIPLGGYVAGA  393 (434)
T ss_pred             CCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHHCCH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             887066657550754998476886699997388626422551-0166999999999999999999999999852855799


Q ss_pred             HH-HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHH
Q ss_conf             88-9999999999999834997110000578973615999999999997
Q gi|254780615|r  403 EE-DKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLV  450 (478)
Q Consensus       403 ~~-~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il  450 (478)
T Consensus       394 d~~~D~ai~~~~~i~~fL~Q~~~----------e~~~~~~s~~~l~~lf  432 (434)
T PRK07196        394 DPMADQAVHYYPAITQFLRQEVG----------HPALFSASVEQLTGMF  432 (434)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCC----------CCCCHHHHHHHHHHHC
T ss_conf             98999999858999998289999----------9949999999999873