HHsearch alignment for GI: 254780615 and conserved domain: PRK07196
>PRK07196 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=932.95 Aligned_cols=419 Identities=24% Similarity=0.375 Sum_probs=395.1
Q ss_pred CCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEE
Q ss_conf 45653413899995578999816665231418998169955999999870898799998148788878888897798489
Q gi|254780615|r 4 KAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQIT 83 (478)
Q Consensus 4 ~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~ 83 (478)
T Consensus 12 ~~~~r~~GrV~~i~G~~ie~~g~~~~iG~~c~I~~~~-g~~v~aEVVgf-~~~~~~L~p~~~~~Gi~~G~~V~~~g~~~~ 89 (434)
T PRK07196 12 IHLARVAGRLVRVTGLLLESVGCRLAIGQRCRIESVD-ETFIEAQVVGF-DRDITYLMPFKHPGGVLGGARVFPSEQDGE 89 (434)
T ss_pred CCCCEEEEEEEEEECCEEEEECCCCCCCCEEEEEECC-CCEEEEEEEEE-CCCEEEEEECCCCCCCCCCCEEEECCCCCE
T ss_conf 9862488899999710899980698989989998089-98889999998-199699998888778899999998899876
Q ss_pred EECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHH
Q ss_conf 88592376558878752301678753001100234544410000134200023110023557021541003675666624
Q gi|254780615|r 84 VPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKT 163 (478)
Q Consensus 84 VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT 163 (478)
T Consensus 90 v~vg~~lLGRVvD~~G~PlDg~g~~~~~~~~~~~~~~~nPl~R~~i~e~l~TGIraID~l~pigrGQRigIfggsGvGKs 169 (434)
T PRK07196 90 LLIGDSWLGRVINGLGEPLDGKGQLGGSTPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKS 169 (434)
T ss_pred EECCHHHCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCCCCHH
T ss_conf 77686224757767886268998888884655668999830137888721268624415577024524210147899789
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 89999999885057885268762164345999999854244200122234443323169997176689678777777787
Q gi|254780615|r 164 VLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGL 243 (478)
Q Consensus 164 ~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~ 243 (478)
T Consensus 170 ~Ll~~I~r~---~~advvVi~lIGeRgrEv~efi~~~~------------~~~~l~~svvv~atsd~~p~~r~~a~~~a~ 234 (434)
T PRK07196 170 VLLGMITRY---TQADVVVVGLIGERGREVKEFIEHSL------------QAAGMAKSVVVAAPADESPLMRIKATELCH 234 (434)
T ss_pred HHHHHHHHH---HCCCEEEEEECCEEHHHHHHHHHHHH------------HCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 999999897---37998999742223499999999874------------246743269998458898788889998899
Q ss_pred HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC-CCCEEEEEEEEECCCCC
Q ss_conf 76899986699679997155999876012455311441011012235666578887631777-65325666543047664
Q gi|254780615|r 244 TVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL-KGSITSVQAIYVPADDL 322 (478)
Q Consensus 244 tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~-~GSIT~~~tV~~~~dD~ 322 (478)
T Consensus 235 aiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gyp~svf~~l~~l~ERaG~~~~~GSITa~~tv~~~~dD~ 314 (434)
T PRK07196 235 AIATYYRDKGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQ 314 (434)
T ss_pred HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCC
T ss_conf 89999986798569995474688999999997568999867758438888589998521578862488888886268887
Q ss_pred CCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 41058999975034256411566318867532235543111620128999999999999999899899999973655699
Q gi|254780615|r 323 TDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELS 402 (478)
Q Consensus 323 ~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~ 402 (478)
T Consensus 315 ~dpi~d~~~silDGhivLsr~la~~G~yPaIdvl~S~SR~m~-~i~~~~~~~~a~~~r~~la~y~e~e~li~~G~Y~~G~ 393 (434)
T PRK07196 315 QDPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMS-QVIGSQQAKAASLLKQCYADYMAIKPLIPLGGYVAGA 393 (434)
T ss_pred CCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHHCCH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 887066657550754998476886699997388626422551-0166999999999999999999999999852855799
Q ss_pred HH-HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHH
Q ss_conf 88-9999999999999834997110000578973615999999999997
Q gi|254780615|r 403 EE-DKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLV 450 (478)
Q Consensus 403 ~~-~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il 450 (478)
T Consensus 394 d~~~D~ai~~~~~i~~fL~Q~~~----------e~~~~~~s~~~l~~lf 432 (434)
T PRK07196 394 DPMADQAVHYYPAITQFLRQEVG----------HPALFSASVEQLTGMF 432 (434)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCC----------CCCCHHHHHHHHHHHC
T ss_conf 98999999858999998289999----------9949999999999873