HHsearch alignment for GI: 254780615 and conserved domain: PRK08927

>PRK08927 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00  E-value=0  Score=960.10  Aligned_cols=424  Identities=26%  Similarity=0.415  Sum_probs=394.1

Q ss_pred             CCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEEC-CCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCE
Q ss_conf             6456534138999955789998166652314189981-699559999998708987999981487888788888977984
Q gi|254780615|r    3 TKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETS-DKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQ   81 (478)
Q Consensus         3 ~~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~-~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~   81 (478)
T Consensus        11 ~~~~~~~~GrV~~V~G~~vev~g~~~~~~iG~~c~I~~~~g~~i~aEVvgf~-~~~~~l~~~~~t~Gi~~G~~V~~tg~~   89 (441)
T PRK08927         11 DIDGVNIYGRVVGVRGLLVEVAGPIHAMSVGARIVVETGDGREIPCEVIGFR-GDRALLMPFGPLEGVRRGCRAVIANAA   89 (441)
T ss_pred             CCCCEEEEEEEEEEECEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEEEEC-CCEEEEEECCCCCCCCCCCEEEECCCC
T ss_conf             4897157789999977089998057777758889999089988999999885-987999988887788999999989999


Q ss_pred             EEEECCHHHHHHHHHHHHHHCCCCCCCC-CHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf             8988592376558878752301678753-001100234544410000134200023110023557021541003675666
Q gi|254780615|r   82 ITVPVGEATLGRIMNVIGEPVDDQGAII-SSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGV  160 (478)
Q Consensus        82 l~VpVG~~lLGRViD~lG~PLDg~g~i~-~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~Gv  160 (478)
T Consensus        90 ~~vpvg~~lLGRVid~lG~PiDg~g~~~~~~~~~pi~~~~p~p~~R~~i~e~L~TGIraID~l~pigrGQRigIfagsGv  169 (441)
T PRK08927         90 AQVRPSAAWLGRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAHSRARVGPPLDLGVRALNTFLTCCRGQRLGIFAGSGV  169 (441)
T ss_pred             CEEECCCCCCCCEECCCCCCCCCCCCCCCCCEECCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             87777866428787767111589998888760040247896846617777631036015653300203646663168999


Q ss_pred             CHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf             62489999999885057885268762164345999999854244200122234443323169997176689678777777
Q gi|254780615|r  161 GKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVAL  240 (478)
Q Consensus       161 GKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~  240 (478)
T Consensus       170 GKs~Ll~~i~r~---~~adv~VialIGeRgrEv~efi~~~l------------~~~~l~rsvvV~atsd~p~~~R~~a~~  234 (441)
T PRK08927        170 GKSVLLSMLARN---TDADVSVIGLIGERGREVQEFLQDDL------------GPEGLARSVVVVATSDEPALMRRQAAY  234 (441)
T ss_pred             CHHHHHHHHHHH---CCCCCEEEEECCCCHHHHHHHHHHHH------------CCCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf             878999999864---16773787522651899999999872------------024522458999637898788799998


Q ss_pred             HHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCC-CCCCCEEEEEEEEECC
Q ss_conf             787768999866996799971559998760124553114410110122356665788876317-7765325666543047
Q gi|254780615|r  241 TGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITT-TLKGSITSVQAIYVPA  319 (478)
Q Consensus       241 ~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~-~~~GSIT~~~tV~~~~  319 (478)
T Consensus       235 ~A~aiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gYppsvf~~l~~l~ERag~~~~~GSIT~~~tVl~~g  314 (441)
T PRK08927        235 LTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAGPGLGEGTITGLFTVLVDG  314 (441)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECEEEEEECC
T ss_conf             75589999997799679983460288899999997558999877878617877178887613578995030303576127


Q ss_pred             CCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             66441058999975034256411566318867532235543111620128999999999999999899899999973655
Q gi|254780615|r  320 DDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMD  399 (478)
Q Consensus       320 dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~  399 (478)
T Consensus       315 dD~~dPi~d~~~~ilDGhIvLsr~La~~G~yPAIDvl~S~SR~~-~~~~~~~h~~~a~~~r~~la~y~e~edli~~G~y~  393 (441)
T PRK08927        315 DDHNEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTM-PGCNDPAELPLVRRARQLMATYADMEELIRLGAYR  393 (441)
T ss_pred             CCCCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             87678724544656364799968798669999808762564424-00027999999999999999888999999973864


Q ss_pred             CCCHH-HHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHHCCC
Q ss_conf             69988-9999999999999834997110000578973615999999999997676
Q gi|254780615|r  400 ELSEE-DKLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLVQGE  453 (478)
Q Consensus       400 ~l~~~-~~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il~g~  453 (478)
T Consensus       394 ~g~d~~~D~ai~~~~~i~~fL~Q~~~----------e~~~~~e~~~~L~~~~~g~  438 (441)
T PRK08927        394 AGSDPEVDEAIRLHPPLEAFLRQGKD----------EATSLAEGYAQLAQILGGP  438 (441)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCC----------CCCCHHHHHHHHHHHHCCC
T ss_conf             79998999999867999998489988----------9989999999999986787