HHsearch alignment for GI: 254780615 and conserved domain: PRK09302
>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=98.69 E-value=7.4e-07 Score=63.88 Aligned_cols=203 Identities=12% Similarity=0.140 Sum_probs=122.5
Q ss_pred HHCCCCCCCCCCCCCCCCCCC--CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 000134200023110023557--021541003675666624899999998850578852687621643459999998542
Q gi|254780615|r 125 EQSTDASILTTGIKVIDLISP--YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMID 202 (478)
Q Consensus 125 ~R~~i~e~L~TGIkaID~l~p--ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~ 202 (478)
T Consensus 240 ~~~~~~~rv~tGi~~LD~llgGGl~~GsstLi~Gp~GtGKTtla~qFl~~~a~-~GE~~l~~~FeE~~~~l~---~~a~~ 315 (501)
T PRK09302 240 TQRSSNERISSGVPDLDEMCGGGFFRGSIILVSGATGTGKTLLVSKFAEAACR-RGERCLLFAFEESRAQLV---RNATS 315 (501)
T ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEEEECCHHHHH---HHHHH
T ss_conf 56665200047973278872599758946999889998889999999999986-599089999967999999---99997
Q ss_pred CCCCCCCCCCCCCCCCCEEEEE-EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCC
Q ss_conf 4420012223444332316999-717668967877777778776899986699679997155999876012455311441
Q gi|254780615|r 203 SKVNIDPRKNNGSAVGSKCSLL-YGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIP 281 (478)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~tv~v-~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P 281 (478)
T Consensus 316 ~G~dl--~~~~~~G---~l~i~~~~p~~~~~~e~~------~~i~~~v~~~~~~-rVvIDsls~~~~~~~~~~------- 376 (501)
T PRK09302 316 WGIDL--EEMERKG---LLKIICARPESTGLEDHL------QIIKREIEEFKPS-RVAVDPLSALARGGSLNE------- 376 (501)
T ss_pred CCCCH--HHHHHCC---CEEEEEECCCCCCHHHHH------HHHHHHHHHCCCC-EEEECCHHHHHHHCCHHH-------
T ss_conf 39984--8887489---479998370005989999------9999999972998-999958068765268599-------
Q ss_pred HHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCC-CCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCC
Q ss_conf 01101223566657888763177765325666543047664-41058999975034256411566318867532235543
Q gi|254780615|r 282 SAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDL-TDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNS 360 (478)
Q Consensus 282 ~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~-~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~S 360 (478)
T Consensus 377 ----~r~~l~~-L~~~Lk------~~gvT~l~t~~~~~~~g~~~~t~~~iS~l~D~ii~Lry~E~~g~l~R~i~VlK~R~ 445 (501)
T PRK09302 377 ----FRQFVIR-LTDYLK------QEEITGLFTNLTPDFMGSHSITESHISSLTDTWILLQYVEINGEMNRALNVLKMRG 445 (501)
T ss_pred ----HHHHHHH-HHHHHH------HCCCEEEEEEECCCCCCCCCCCCCCHHHHCCEEEEEEEEEECCEEEEEEEEEEECC
T ss_conf ----9999999-999997------68978999761235567664476660011124789998713899989899999368
Q ss_pred C
Q ss_conf 1
Q gi|254780615|r 361 S 361 (478)
Q Consensus 361 r 361 (478)
T Consensus 446 s 446 (501)
T PRK09302 446 S 446 (501)
T ss_pred C
T ss_conf 9