HHsearch alignment for GI: 254780615 and conserved domain: PRK09302
>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=98.41 E-value=1.1e-05 Score=56.31 Aligned_cols=70 Identities=29% Similarity=0.348 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCCC--CCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
Q ss_conf 20002311002355--70215410036756666248999999988505788526876216434599999985
Q gi|254780615|r 131 SILTTGIKVIDLIS--PYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEM 200 (478)
Q Consensus 131 e~L~TGIkaID~l~--pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~ 200 (478)
T Consensus 4 eRi~TGI~GLD~iL~GGlp~g~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyitl~E~~~~l~~~~~~~ 75 (501)
T PRK09302 4 EKLPTGIEGFDDITNGGLPKGRPTLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVTFEESPEDIIRNVASF 75 (501)
T ss_pred CCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHC
T ss_conf 421448711577854898899779998389999999999999999885599789998579999999999984