HHsearch alignment for GI: 254780615 and conserved domain: PRK09354

>PRK09354 recA recombinase A; Provisional.
Probab=97.20  E-value=0.0014  Score=42.36  Aligned_cols=109  Identities=25%  Similarity=0.363  Sum_probs=72.8

Q ss_pred             CCCCCCCCCCCCCCC---CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCC
Q ss_conf             200023110023557---02154100367566662489999999885057885268762164345999999854244200
Q gi|254780615|r  131 SILTTGIKVIDLISP---YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNI  207 (478)
Q Consensus       131 e~L~TGIkaID~l~p---ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~  207 (478)
T Consensus        39 ~~isTGsl~LD~aLGiGG~P~GRivEi~G~esSGKTtlal~~iaeaQk~-Gg~~a~iDa-E~al-d~~~a~~l---GV--  110 (350)
T PRK09354         39 ETISTGSLALDIALGIGGLPKGRIVEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDA-EHAL-DPVYAKKL---GV--  110 (350)
T ss_pred             CEECCCCHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEEE-CCCC-CHHHHHHC---CC--
T ss_conf             6544771789998758996787089998898777999999999999975-994799960-0027-98899984---97--


Q ss_pred             CCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHH
Q ss_conf             12223444332316999717668967877777778776899986699679997155999
Q gi|254780615|r  208 DPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRF  266 (478)
Q Consensus       208 ~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~  266 (478)
T Consensus       111 -----------d~d~llv~qpd--------~~Eqal~i~e~Lvrsg~vd~IVvDSVaAL  150 (350)
T PRK09354        111 -----------DIDNLLVSQPD--------TGEQALEIADALVRSGAVDLIVVDSVAAL  150 (350)
T ss_pred             -----------CHHHEEEECCC--------HHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf             -----------71571785686--------79999999999985488418998253345