HHsearch alignment for GI: 254780615 and conserved domain: PRK09354
>PRK09354 recA recombinase A; Provisional.
Probab=97.20 E-value=0.0014 Score=42.36 Aligned_cols=109 Identities=25% Similarity=0.363 Sum_probs=72.8
Q ss_pred CCCCCCCCCCCCCCC---CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCC
Q ss_conf 200023110023557---02154100367566662489999999885057885268762164345999999854244200
Q gi|254780615|r 131 SILTTGIKVIDLISP---YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNI 207 (478)
Q Consensus 131 e~L~TGIkaID~l~p---ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~ 207 (478)
T Consensus 39 ~~isTGsl~LD~aLGiGG~P~GRivEi~G~esSGKTtlal~~iaeaQk~-Gg~~a~iDa-E~al-d~~~a~~l---GV-- 110 (350)
T PRK09354 39 ETISTGSLALDIALGIGGLPKGRIVEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDA-EHAL-DPVYAKKL---GV-- 110 (350)
T ss_pred CEECCCCHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEEE-CCCC-CHHHHHHC---CC--
T ss_conf 6544771789998758996787089998898777999999999999975-994799960-0027-98899984---97--
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHH
Q ss_conf 12223444332316999717668967877777778776899986699679997155999
Q gi|254780615|r 208 DPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRF 266 (478)
Q Consensus 208 ~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~ 266 (478)
T Consensus 111 -----------d~d~llv~qpd--------~~Eqal~i~e~Lvrsg~vd~IVvDSVaAL 150 (350)
T PRK09354 111 -----------DIDNLLVSQPD--------TGEQALEIADALVRSGAVDLIVVDSVAAL 150 (350)
T ss_pred -----------CHHHEEEECCC--------HHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf -----------71571785686--------79999999999985488418998253345