HHsearch alignment for GI: 254780615 and conserved domain: PRK12608
>PRK12608 transcription termination factor Rho; Provisional.
Probab=100.00 E-value=0 Score=349.63 Aligned_cols=295 Identities=23% Similarity=0.279 Sum_probs=235.0
Q ss_pred CCCCCCCCCEEEECCCEEEEECCHHHHHHHHHHHHHHCCCCC-CCCCHHHHCCCCCCCCCHHHCC---CCCCCCCCCCCC
Q ss_conf 878887888889779848988592376558878752301678-7530011002345444100001---342000231100
Q gi|254780615|r 65 RTDGLSRGDCVIDTGTQITVPVGEATLGRIMNVIGEPVDDQG-AIISSEKRAIHQPSPSYTEQST---DASILTTGIKVI 140 (478)
Q Consensus 65 ~t~GI~~G~~V~~tg~~l~VpVG~~lLGRViD~lG~PLDg~g-~i~~~~~~pi~~~~p~~~~R~~---i~e~L~TGIkaI 140 (478)
T Consensus 54 rrf~LR~GD~V~G~iR~p~--~ge-aL~~V~~VNg~~pe~~~~R~~F~~LT-----Pi~P~erl~LE~~~~~~s~--Rii 123 (379)
T PRK12608 54 RRFGLRTGDLVEGVIRAPR--EKE-TLVRIDSVNGTDPEKLQRRKHFDDLT-----PLHPEERIVLETGSDDLSM--RVL 123 (379)
T ss_pred HHCCCCCCCEEEEEECCCC--CCH-HHEEEHHCCCCCHHHHCCCCCCCCCC-----CCCCCCEEECCCCCCCCCC--CEE
T ss_conf 7549999998999863899--874-20414523894989955746755687-----7799650440148876441--103
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-EECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 23557021541003675666624899999998850578852687-62164345999999854244200122234443323
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGS 219 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~-~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~ 219 (478)
T Consensus 124 DL~aPIGkGQRgLIVAPPkaGKT~LLq~IA~aI~~NhPev~livLLIDERPEEVTdm~r~v------------------- 184 (379)
T PRK12608 124 DLVAPIGKGQRGLIVAPPRAGKTILLQQIAQAVAANHPDIHLMVLLIDERPEEVTDMKRSV------------------- 184 (379)
T ss_pred EEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHC-------------------
T ss_conf 1004634574012745898657899999999998579984899998168935888888623-------------------
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHH
Q ss_conf 16999717668967877777778776899986699679997155999876012455311441011012235666578887
Q gi|254780615|r 220 KCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQE 299 (478)
Q Consensus 220 ~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~E 299 (478)
T Consensus 185 ~gEVvaSTfD~~~~~h~~vAel~lerAkrlvE~G~dVvillDSiTRlaRAyn~~~~~sGr~ls-gg~d~~-al~~pk~~F 262 (379)
T PRK12608 185 KGEVYASTFDRPYDRHIRVAELVLERAKRLVEEGKDVVILLDSLTRLARAYNSEVDSSGRTLS-GGVDAR-ALERPKRLF 262 (379)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCCCCCC-CCCCHH-HHHHHHHHH
T ss_conf 707999779899899999999999999999876996899965177889987533688886157-786956-750068985
Q ss_pred HHCCC--CCCCEEEEEEEEEC-CCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHH
Q ss_conf 63177--76532566654304-7664410589999750342564115663188675322355431116201289999999
Q gi|254780615|r 300 RITTT--LKGSITSVQAIYVP-ADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVA 376 (478)
Q Consensus 300 Rag~~--~~GSIT~~~tV~~~-~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a 376 (478)
T Consensus 263 gaar~ie~gGSlTiiaTaLveTgs~mD~~i~eefkgtgn~el~Ldr~la~~r~fPAIdi~~SgTR~-EelLl~~~e~~~~ 341 (379)
T PRK12608 263 GAARKIEEGGSLTILATALVDTGSRMDEVIFEEFKGTGNMEIVLDRELADKRVFPAIDIAKSGTRR-EELLLDSKELEKV 341 (379)
T ss_pred HHCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCCCCCCCCCCCCCH-HHHCCCHHHHHHH
T ss_conf 312577788663256666322666434588999632686089972557767887511554577622-6654899999999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999998998999
Q gi|254780615|r 377 RRVQEILQRYKSLQD 391 (478)
Q Consensus 377 ~~~r~~l~~y~el~~ 391 (478)
T Consensus 342 ~~lRr~l~~~~~~ea 356 (379)
T PRK12608 342 RLLRRALASLKPVEA 356 (379)
T ss_pred HHHHHHHCCCCHHHH
T ss_conf 999998617997999