HHsearch alignment for GI: 254780615 and conserved domain: PRK12678

>PRK12678 transcription termination factor Rho; Provisional.
Probab=100.00  E-value=2.6e-38  Score=270.31  Aligned_cols=245  Identities=23%  Similarity=0.331  Sum_probs=201.2

Q ss_pred             CCCCHHHCCC-CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-EECCCHHHHHHHH
Q ss_conf             4441000013-4200023110023557021541003675666624899999998850578852687-6216434599999
Q gi|254780615|r  120 SPSYTEQSTD-ASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGERTREGNDLY  197 (478)
Q Consensus       120 ~p~~~~R~~i-~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~-~iGER~rEv~e~~  197 (478)
T Consensus       381 p~~P~erl~le~~~~~~t~RiiDl~~PiGkGQRgLIVapPkaGKT~ll~~ia~ai~~N~pe~~l~vlLiDERPEEVTdm~  460 (667)
T PRK12678        381 PLYPNERLRLETEPNKLTTRVIDLIMPIGKGQRGLIVSPPKAGKTTILQDIANAITTNNPECHLMVVLVDERPEEVTDMQ  460 (667)
T ss_pred             CCCCCCEEECCCCCCCCCHHHHEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH
T ss_conf             78986422334677653222301113567884546757997872599999999998569972899997378851566766


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHH
Q ss_conf             98542442001222344433231699971766896787777777877689998669967999715599987601245531
Q gi|254780615|r  198 HEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALL  277 (478)
Q Consensus       198 ~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~  277 (478)
T Consensus       461 r~v-------------------~geViaStfD~~~~~H~~vael~iErAkRlvE~g~DVvillDSiTRLaRAyN~~~p~s  521 (667)
T PRK12678        461 RSV-------------------KGEVIASTFDRPPSDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPAS  521 (667)
T ss_pred             HCC-------------------CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCCC
T ss_conf             404-------------------6069986688988889999999999999987569977999640668888760446998


Q ss_pred             CCCCH-----HHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCE----EEEEHHHHHCC
Q ss_conf             14410-----1101223566657888763177765325666543047664410589999750342----56411566318
Q gi|254780615|r  278 GRIPS-----AVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDAT----TVLSRQISEKG  348 (478)
Q Consensus       278 g~~P~-----~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~~dpi~~~~~si~Dg~----ivLsr~la~~g  348 (478)
T Consensus       522 Gr~lsGGvD~~Al~~PKrffGAARnie-----~GGSLTIlaTaLveTGSrmDev---IfeEFKGTGNmEl~LdR~la~~R  593 (667)
T PRK12678        522 GRILSGGVDSTALYPPKRFFGAARNIE-----NGGSLTIIATALVETGSTMDTV---IFEEFKGTGNAELKLDRKIADKR  593 (667)
T ss_pred             CCCCCCCCCHHHHHCHHHHHHHHHCCC-----CCCCHHHHHHHHHCCCCHHHHH---HHHHHCCCCCEEEEECHHHHHCC
T ss_conf             773467648676601077767775247-----6744767544553046506788---99885376642888623356455


Q ss_pred             CCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             86753223554311162012899999999999999989989999
Q gi|254780615|r  349 IYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDI  392 (478)
Q Consensus       349 ~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~  392 (478)
T Consensus       594 ifPAidi~~SgTR~-eelLl~~~e~~~~~~lRr~l~~~~~~~a~  636 (667)
T PRK12678        594 VFPAVDVNPSGTRK-EELLLSPDELAIVHKLRRVLSGLDSQQAI  636 (667)
T ss_pred             CCCCCCCCCCCCCH-HHHCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             65311344577506-76537999999999999987259989999