HHsearch alignment for GI: 254780615 and conserved domain: PRK12678
>PRK12678 transcription termination factor Rho; Provisional.
Probab=100.00 E-value=2.6e-38 Score=270.31 Aligned_cols=245 Identities=23% Similarity=0.331 Sum_probs=201.2
Q ss_pred CCCCHHHCCC-CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-EECCCHHHHHHHH
Q ss_conf 4441000013-4200023110023557021541003675666624899999998850578852687-6216434599999
Q gi|254780615|r 120 SPSYTEQSTD-ASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGERTREGNDLY 197 (478)
Q Consensus 120 ~p~~~~R~~i-~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~-~iGER~rEv~e~~ 197 (478)
T Consensus 381 p~~P~erl~le~~~~~~t~RiiDl~~PiGkGQRgLIVapPkaGKT~ll~~ia~ai~~N~pe~~l~vlLiDERPEEVTdm~ 460 (667)
T PRK12678 381 PLYPNERLRLETEPNKLTTRVIDLIMPIGKGQRGLIVSPPKAGKTTILQDIANAITTNNPECHLMVVLVDERPEEVTDMQ 460 (667)
T ss_pred CCCCCCEEECCCCCCCCCHHHHEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH
T ss_conf 78986422334677653222301113567884546757997872599999999998569972899997378851566766
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHH
Q ss_conf 98542442001222344433231699971766896787777777877689998669967999715599987601245531
Q gi|254780615|r 198 HEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALL 277 (478)
Q Consensus 198 ~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~ 277 (478)
T Consensus 461 r~v-------------------~geViaStfD~~~~~H~~vael~iErAkRlvE~g~DVvillDSiTRLaRAyN~~~p~s 521 (667)
T PRK12678 461 RSV-------------------KGEVIASTFDRPPSDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPAS 521 (667)
T ss_pred HCC-------------------CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCCC
T ss_conf 404-------------------6069986688988889999999999999987569977999640668888760446998
Q ss_pred CCCCH-----HHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCE----EEEEHHHHHCC
Q ss_conf 14410-----1101223566657888763177765325666543047664410589999750342----56411566318
Q gi|254780615|r 278 GRIPS-----AVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDLTDPAPATSFTHLDAT----TVLSRQISEKG 348 (478)
Q Consensus 278 g~~P~-----~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~~dpi~~~~~si~Dg~----ivLsr~la~~g 348 (478)
T Consensus 522 Gr~lsGGvD~~Al~~PKrffGAARnie-----~GGSLTIlaTaLveTGSrmDev---IfeEFKGTGNmEl~LdR~la~~R 593 (667)
T PRK12678 522 GRILSGGVDSTALYPPKRFFGAARNIE-----NGGSLTIIATALVETGSTMDTV---IFEEFKGTGNAELKLDRKIADKR 593 (667)
T ss_pred CCCCCCCCCHHHHHCHHHHHHHHHCCC-----CCCCHHHHHHHHHCCCCHHHHH---HHHHHCCCCCEEEEECHHHHHCC
T ss_conf 773467648676601077767775247-----6744767544553046506788---99885376642888623356455
Q ss_pred CCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86753223554311162012899999999999999989989999
Q gi|254780615|r 349 IYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDI 392 (478)
Q Consensus 349 ~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~ 392 (478)
T Consensus 594 ifPAidi~~SgTR~-eelLl~~~e~~~~~~lRr~l~~~~~~~a~ 636 (667)
T PRK12678 594 VFPAVDVNPSGTRK-EELLLSPDELAIVHKLRRVLSGLDSQQAI 636 (667)
T ss_pred CCCCCCCCCCCCCH-HHHCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 65311344577506-76537999999999999987259989999