HHsearch alignment for GI: 254780615 and conserved domain: PRK13342
>PRK13342 recombination factor protein RarA; Reviewed.
Probab=96.84 E-value=0.0048 Score=38.86 Aligned_cols=83 Identities=20% Similarity=0.382 Sum_probs=46.9
Q ss_pred CCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEE
Q ss_conf 55702154100367566662489999999885057885268762164345999999854244200122234443323169
Q gi|254780615|r 143 ISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCS 222 (478)
Q Consensus 143 l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv 222 (478)
T Consensus 31 ~i~~~~~~s~Il~GPPG~GKTTlA~iiA~~-~--~~~f~~lnA~~~gv~dir~ii~~----------------------- 84 (417)
T PRK13342 31 MIEAGRLSSMILWGPPGTGKTTLARIIAGA-T--DAEFEALSAVTSGVKDLREVIEE----------------------- 84 (417)
T ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHH-H--CCCEEEEECCCCCHHHHHHHHHH-----------------------
T ss_conf 997699975998896999899999999998-6--89889961410388999999999-----------------------
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHH
Q ss_conf 99717668967877777778776899986699679997155999876012455
Q gi|254780615|r 223 LLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISA 275 (478)
Q Consensus 223 ~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl 275 (478)
T Consensus 85 -----------------------a~~~-~~~~~tilfiDEIHRfnK~QQD~LL 113 (417)
T PRK13342 85 -----------------------AKQS-RLGRRTILFIDEIHRFNKAQQDALL 113 (417)
T ss_pred -----------------------HHHH-HCCCCEEEEEECHHHCCHHHHHHHH
T ss_conf -----------------------8863-1489659999782005889999998