HHsearch alignment for GI: 254780615 and conserved domain: PRK13342

>PRK13342 recombination factor protein RarA; Reviewed.
Probab=96.84  E-value=0.0048  Score=38.86  Aligned_cols=83  Identities=20%  Similarity=0.382  Sum_probs=46.9

Q ss_pred             CCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEE
Q ss_conf             55702154100367566662489999999885057885268762164345999999854244200122234443323169
Q gi|254780615|r  143 ISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCS  222 (478)
Q Consensus       143 l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv  222 (478)
T Consensus        31 ~i~~~~~~s~Il~GPPG~GKTTlA~iiA~~-~--~~~f~~lnA~~~gv~dir~ii~~-----------------------   84 (417)
T PRK13342         31 MIEAGRLSSMILWGPPGTGKTTLARIIAGA-T--DAEFEALSAVTSGVKDLREVIEE-----------------------   84 (417)
T ss_pred             HHHCCCCCEEEEECCCCCCHHHHHHHHHHH-H--CCCEEEEECCCCCHHHHHHHHHH-----------------------
T ss_conf             997699975998896999899999999998-6--89889961410388999999999-----------------------


Q ss_pred             EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHH
Q ss_conf             99717668967877777778776899986699679997155999876012455
Q gi|254780615|r  223 LLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISA  275 (478)
Q Consensus       223 ~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl  275 (478)
T Consensus        85 -----------------------a~~~-~~~~~tilfiDEIHRfnK~QQD~LL  113 (417)
T PRK13342         85 -----------------------AKQS-RLGRRTILFIDEIHRFNKAQQDALL  113 (417)
T ss_pred             -----------------------HHHH-HCCCCEEEEEECHHHCCHHHHHHHH
T ss_conf             -----------------------8863-1489659999782005889999998