HHsearch alignment for GI: 254780615 and conserved domain: PRK13343
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional.
Probab=100.00 E-value=0 Score=952.93 Aligned_cols=446 Identities=24% Similarity=0.373 Sum_probs=410.7
Q ss_pred CCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCE
Q ss_conf 76456534138999955789998166652314189981699559999998708987999981487888788888977984
Q gi|254780615|r 2 TTKAKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQ 81 (478)
Q Consensus 2 ~~~~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~ 81 (478)
T Consensus 20 ~~~~~~~~~G~V~~v~dgi~~v~GL~~~-~~gel~~f-~~~--~~-g~v~~l~~d~v~~v~lg~~~~i~~G~~V~~TG~~ 94 (502)
T PRK13343 20 ELAPDAQEIGRVESVGDGIAFVSGLPDA-ALDELLRF-DGG--SR-GFAFNLEEELVGAVLLDDTADLRAGTEVKRTGRV 94 (502)
T ss_pred CCCCCEEEEEEEEEECCCEEEEECCCCC-CCCCEEEE-CCC--CE-EEEEECCCCEEEEEEECCCCCCCCCCEEEECCCC
T ss_conf 8877236767999982867999267414-23888997-899--77-9999414983999995598788999999968995
Q ss_pred EEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf 89885923765588787523016787530011002345444100001342000231100235570215410036756666
Q gi|254780615|r 82 ITVPVGEATLGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVG 161 (478)
Q Consensus 82 l~VpVG~~lLGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvG 161 (478)
T Consensus 95 l~VpVG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~ap~~~~R~~v~epL~TGIkaID~l~pigrGQR~gIfg~~GvG 174 (502)
T PRK13343 95 LEVPVGDALLGRVIDPLGRPLDGGGPLEATATRPIERPAPAIIERDSVTEPLQTGLKVIDALIPIGRGQRELIIGDRQTG 174 (502)
T ss_pred EEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCC
T ss_conf 48875731025873788344389999887643214688978332166675431260674055664678577513678888
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 24899999998850578852687621643459999998542442001222344433231699971766896787777777
Q gi|254780615|r 162 KTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALT 241 (478)
Q Consensus 162 KT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~ 241 (478)
T Consensus 175 KT~L~~~~I~n-q~~~~vi~Vyv~IGer~~ev~~~v~~l~~------------~gal~~tvvV~ata~~p~~~r~~ap~~ 241 (502)
T PRK13343 175 KTAIAIDAIIN-QKDKDVICVYVAIGQKASTVARVIDTLRE------------HGALEYTTVVVAEASDPPGLQYLAPFA 241 (502)
T ss_pred CCHHHHHHHHH-HCCCCCEEEEEEEEEEEHHHHHHHHHHHH------------CCCCHHHEEEECCCCCCHHHHHHHHHH
T ss_conf 04899999997-25788749999960451659899999876------------485131224523778986887555665
Q ss_pred HHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC----CCCEEEEEEEEE
Q ss_conf 8776899986699679997155999876012455311441011012235666578887631777----653256665430
Q gi|254780615|r 242 GLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL----KGSITSVQAIYV 317 (478)
Q Consensus 242 a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~----~GSIT~~~tV~~ 317 (478)
T Consensus 242 a~aiAEyFrd~GkdVLlv~Ddltr~A~A~REislllgrpPgr~gYPg~vf~~~srLlERa~~~~~~~ggGSITalp~V~~ 321 (502)
T PRK13343 242 GCAIAEYFRDRGRDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERATKLSPELGGGSLTALPIIET 321 (502)
T ss_pred HCCHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEC
T ss_conf 20257999966996799995668999999899997489987667694588772689988875268899846645169972
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 47664410589999750342564115663188675322355431116201289999999999999998998999999736
Q gi|254780615|r 318 PADDLTDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILG 397 (478)
Q Consensus 318 ~~dD~~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g 397 (478)
T Consensus 322 ~~dDis~pIp~~v~sItDGqIvLsr~La~~G~~PAIdv~~SvSRVg~-~aq~~~~k~va~~lr~~laqy~el~~f~~fg~ 400 (502)
T PRK13343 322 QAGDLAAYIPTNLISITDGQIFLDSDLFASGQRPAVDVGKSVSRVGG-KAQHPAIRKESGRLRLDYAQFLELEAFTRFGA 400 (502)
T ss_pred CCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 48875663456565222616997245322683785178776135685-77889999999999999998999999998743
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCC--------EEECCCCCCCEEECHH-HHHHHHHHHHCCCCCCCCHHHHHHCCCH
Q ss_conf 556998899999999999998349971--------1000057897361599-9999999997676446897897641899
Q gi|254780615|r 398 MDELSEEDKLVVARARKLERFMSQPFH--------VAESFTGLPGKFVSLE-ETIRGFKGLVQGEYDHLPELAFYMVGSI 468 (478)
Q Consensus 398 ~~~l~~~~~~~i~r~~~i~~fL~Qp~~--------~~e~ft~~~g~~v~~~-eti~~~~~il~g~~d~~pe~~~~~~g~i 468 (478)
T Consensus 401 --~ld~~~~~~l~rg~r~~~~lkQ~~~~p~~~~~qv~~l~a~~~g~~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~ 478 (502)
T PRK13343 401 --RLDAGTRKQITRGRRLRELLKQPRFSPLSVEEQIALLYALNNGLLDDVPLDNIPPFEEELLAKLDARPSALLFALAPT 478 (502)
T ss_pred --CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHC
T ss_conf --589999999999999999857888999789999998877448873666889999999999999986669999999742