>TIGR00416 sms DNA repair protein RadA; InterPro: IPR004504 RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.

Probab=93.91 E-value=0.079 Score=30.88 Aligned_cols=153 Identities=16% Similarity=0.191 Sum_probs=85.3 Q ss_pred CCCCCCCCCCCCCC--CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCC--C Q ss_conf 00023110023557--0215410036756666248999999988505788526876216434599999985424420--0 Q gi|254780615|r 132 ILTTGIKVIDLISP--YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVN--I 207 (478) Q Consensus 132 ~L~TGIkaID~l~p--ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~--~ 207 (478) T Consensus 84 rf~s~~~ElDrVLGGGivpGsliLiGG~PG~GKSTLLLqV~~~LA~~~-~~~LYV-sGEES--~~Q~k--lRA~RLGit~ 157 (481) T TIGR00416 84 RFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNS-MKVLYV-SGEES--LQQIK--LRATRLGITD 157 (481) T ss_pred EEECCCCCCCEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEE-EECCH--HHHHH--HHHHHCCCCC T ss_conf 053066410011067222441698468899635678999999984048-816899-72301--67788--8875455324 Q ss_pred CCCC---CCC--CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCH Q ss_conf 1222---344--43323169997176689678777777787768999866996799971559998760124553114410 Q gi|254780615|r 208 DPRK---NNG--SAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPS 282 (478) Q Consensus 208 ~~~~---~~~--~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~ 282 (478) T Consensus 158 ~~~~sqaqdGinnlahdG~L~~L~Et~~e~I~~~~-------------e~~~P~~~ViDSIQ~l--y~~di~Sa------ 216 (481) T TIGR00416 158 LVEPSQAQDGINNLAHDGNLYVLSETNLEQICAEI-------------EELNPQVVVIDSIQTL--YLPDISSA------ 216 (481) T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH-------------HHHCCCEEEEECCCCC--CCHHHCCC------ T ss_conf 78702344324543026753215757989999999-------------8529948999142100--00000258------ Q ss_pred HHHCCHHHHH--HHHHHHHHHCCCCCCCEEEEEEE Q ss_conf 1101223566--65788876317776532566654 Q gi|254780615|r 283 AVGYQSTLAL--EMGELQERITTTLKGSITSVQAI 315 (478) Q Consensus 283 ~~gYp~~~f~--~~~~l~ERag~~~~GSIT~~~tV 315 (478) T Consensus 217 ----PGSVsQVRE~t~~Lmr~AKt~~iaifiVGHV 247 (481) T TIGR00416 217 ----PGSVSQVRECTAELMRLAKTRGIAIFIVGHV 247 (481) T ss_pred ----CCCHHHHHHHHHHHHHHHHHCCCCEEEEEEE T ss_conf ----8842388899999987652168657997004

HHsearch alignment for GI: 254780615 and conserved domain: TIGR00416