>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.

Probab=94.60 E-value=0.054 Score=31.94 Aligned_cols=180 Identities=23% Similarity=0.359 Sum_probs=93.1 Q ss_pred CEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-EECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCC Q ss_conf 1003675666624899999998850578852687-621643459999998542442001222344433231699971766 Q gi|254780615|r 151 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMN 229 (478) Q Consensus 151 r~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~-~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~ 229 (478) T Consensus 32 H~LL~GPPGLGKTTLA~IiA~Emg---~~l~iTsGP~L~kPgD------------------------------------- 71 (305) T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMG---VNLKITSGPALEKPGD------------------------------------- 71 (305) T ss_pred CEEEECCCCCCHHHHHHHHHHHHC---CCCEEEECCCCCCHHH------------------------------------- T ss_conf 166317568746789999999838---9326740675547578------------------------------------- Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHH----------HHHCCCCHHHHCCHHHHHHHHHHHH Q ss_conf 896787777777877689998669967999715599987601245----------5311441011012235666578887 Q gi|254780615|r 230 EPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEIS----------ALLGRIPSAVGYQSTLALEMGELQE 299 (478) Q Consensus 230 ~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEis----------l~~g~~P~~~gYp~~~f~~~~~l~E 299 (478) T Consensus 72 ------laaiLt~L--------~~gDVLFI-DEIHRL~p~~EE~LYpAMEDF~lDi~IG~Gp~Ar----~v~ldLpPF-- 130 (305) T TIGR00635 72 ------LAAILTNL--------EEGDVLFI-DEIHRLSPAIEELLYPAMEDFRLDIVIGKGPSAR----SVRLDLPPF-- 130 (305) T ss_pred ------HHHHHHHC--------CCCCEEEC-CHHHHCCHHHHHHCCCCCCCEEEEEEEECCCCCC----EEEECCCCC-- T ss_conf ------99999705--------68963101-2565048334531053001217877871289852----576068694-- Q ss_pred HHCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHC-CCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHH Q ss_conf 63177765325666543047664410589999750-34256411566318867532235543111620128999999999 Q gi|254780615|r 300 RITTTLKGSITSVQAIYVPADDLTDPAPATSFTHL-DATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARR 378 (478) Q Consensus 300 Rag~~~~GSIT~~~tV~~~~dD~~dpi~~~~~si~-Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~ 378 (478) T Consensus 131 ----------TLvG-ATTR~G~lt~PLrdR-FG~~~rl~fY~~~EL~--------~Iv~R~A~~L~~ei~~~~a~~IArr 190 (305) T TIGR00635 131 ----------TLVG-ATTRAGMLTSPLRDR-FGIILRLEFYTPEELA--------EIVSRSAGLLNIEIEQEAALEIARR 190 (305) T ss_pred ----------CCCC-CCCCCCCCCCCHHHH-HHHHHHCCCCCHHHHH--------HHHHHHHHHCCCCCCHHHHHHHHHH T ss_conf ----------4200-003477410313345-4474540268987899--------9987533441430077899999875 Q ss_pred HHHH----HHHHHHHHHHHHHHCCCCCCHH-HHHHHHH Q ss_conf 9999----9989989999997365569988-9999999 Q gi|254780615|r 379 VQEI----LQRYKSLQDIIAILGMDELSEE-DKLVVAR 411 (478) Q Consensus 379 ~r~~----l~~y~el~~~i~~~g~~~l~~~-~~~~i~r 411 (478) T Consensus 191 SRGTPRIAnRLLRRVRDfA~V~~~~~I~~~i~~~AL~~ 228 (305) T TIGR00635 191 SRGTPRIANRLLRRVRDFAQVRGQGVITRDIALKALEM 228 (305) T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 47863788877676644888726787388999999886

HHsearch alignment for GI: 254780615 and conserved domain: TIGR00635