HHsearch alignment for GI: 254780615 and conserved domain: TIGR00767
>TIGR00767 rho transcription termination factor Rho; InterPro: IPR004665 Members of this family have a related but highly variable long, highly charged insert near the amino end. The proteins differ in the specificity of RNA binding.; GO: 0003715 transcription termination factor activity, 0005524 ATP binding, 0006353 transcription termination.
Probab=99.86 E-value=1.3e-20 Score=154.07 Aligned_cols=241 Identities=21% Similarity=0.299 Sum_probs=201.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCE-EEEEECCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 200023110023557021541003675666624899999998850578852-6876216434599999985424420012
Q gi|254780615|r 131 SILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS-VFAGVGERTREGNDLYHEMIDSKVNIDP 209 (478)
Q Consensus 131 e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~-V~~~iGER~rEv~e~~~e~~~~~~~~~~ 209 (478)
T Consensus 155 ~~~~~~~~~~~~~~p~g~g~~~l~~~pp~~g~~~~~~~~~~~~~~~~p~~~l~~~l~d~~p~~~~~~~~~~--------- 225 (420)
T TIGR00767 155 DPEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIANAITRNHPEVELIVLLIDERPEEVTDLQRSV--------- 225 (420)
T ss_pred CCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHH---------
T ss_conf 51146778887651036775303651775442688888887763268743799886336622567777764---------
Q ss_pred CCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHH
Q ss_conf 22344433231699971766896787777777877689998669967999715599987601245531144101101223
Q gi|254780615|r 210 RKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQST 289 (478)
Q Consensus 210 ~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~ 289 (478)
T Consensus 226 ----------~g~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~p~~g~~l~-gg~~~~ 294 (420)
T TIGR00767 226 ----------KGEVVASTFDEPPSRHVQVAELVLEKAKRLVEHKKDVVILLDSITRLARAYNTVTPPSGKVLS-GGVDAN 294 (420)
T ss_pred ----------HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCCCEEE-CCCCHH
T ss_conf ----------212321001344101246889999988887632563477402356766654103666663221-564501
Q ss_pred HHHHHHHHHHHHCCCC-CCCEEEEEEEEECCCCCCCH-HHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 5666578887631777-65325666543047664410-589999750342564115663188675322355431116201
Q gi|254780615|r 290 LALEMGELQERITTTL-KGSITSVQAIYVPADDLTDP-APATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDI 367 (478)
Q Consensus 290 ~f~~~~~l~ERag~~~-~GSIT~~~tV~~~~dD~~dp-i~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i 367 (478)
T Consensus 295 ~~~~p~~~~g~~~~~~~gg~l~~~~~~~~~~g~~~d~~~~~~~~g~g~~~~~l~~~~~~~~~~p~~~~~~~g~~~-~~~l 373 (420)
T TIGR00767 295 ALHRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNLELHLDRKLADRRLFPAIDIKKSGTRK-EELL 373 (420)
T ss_pred HHCCCHHHHHHHCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCCH-HHHC
T ss_conf 201414553001022466522221001231365101344443227775011100133321102210123456521-2320
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2899999999999999989989999
Q gi|254780615|r 368 VGQEHYDVARRVQEILQRYKSLQDI 392 (478)
Q Consensus 368 ~~~~h~~~a~~~r~~l~~y~el~~~ 392 (478)
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (420)
T TIGR00767 374 LSPEELQKLWLLRKVLSPLDDVEAL 398 (420)
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 3778888999998874044505789