HHsearch alignment for GI: 254780615 and conserved domain: TIGR01026
>TIGR01026 fliI_yscN ATPase FliI/YscN family; InterPro: IPR005714 Proteins in this entry show extensive homology to the ATP synthase F1 beta subunit, and are involved in type III protein secretion. They fall into the two separate functional groups outlined below. The first group, exemplified by the Salmonella typhimurium FliI protein (P26465 from SWISSPROT), is needed for flagellar assembly. Most structural components of the bacterial flagellum are translocated through the central channel of the growing flagellar structure by the type III flagellar protein-export apparatus in an ATPase-driven manner, to be assembled at the growing end. FliI is the ATPase that couples ATP hydrolysis to the translocation reaction , . The second group couples ATP hydrolysis to protein translocation in non-flagellar type III secretion systems. Often these systems are involved in virulence and pathogenicity. YscN (P40290 from SWISSPROT) from pathogenic Yersinia species, for example, energises the injection of antihost factors directly into eukaryotic cells, thus overcoming host defences .; GO: 0016887 ATPase activity, 0009058 biosynthetic process, 0015031 protein transport, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=1069.08 Aligned_cols=420 Identities=30% Similarity=0.502 Sum_probs=397.6
Q ss_pred CCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCC-CCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECC----
Q ss_conf 5653413899995578999816665231418998169-95599999987089879999814878887888889779----
Q gi|254780615|r 5 AKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDK-GSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTG---- 79 (478)
Q Consensus 5 ~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~-g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg---- 79 (478)
T Consensus 19 ~~~~~~G~v~~v~Gl~~ea~gp~~~vG~~c~I~~~g~~~~~~~~EVVGf~~-~~v~LmPy~~~~G~~~G~~V~~~~isae 97 (455)
T TIGR01026 19 EAVKRVGRVTKVKGLLIEAVGPQASVGDLCLIERKGSEGKEVVAEVVGFNG-EKVLLMPYEEVEGVEPGSKVLAKNISAE 97 (455)
T ss_pred CCEEEEEEEEEEEEEEEEEECCCCCCCCEEEEEEECCCCCEEEEEEEEEEC-CEEEECCCCCCCCCCCCCEEEEECCCCC
T ss_conf 630257899998526898524776677778999737898779999885206-7567523654443353452332043300
Q ss_pred CEEEEE---CCHHHHHHHHHHHHHHCCCCC--CCCCHHHH-CCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 848988---592376558878752301678--75300110-023454441000013420002311002355702154100
Q gi|254780615|r 80 TQITVP---VGEATLGRIMNVIGEPVDDQG--AIISSEKR-AIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIG 153 (478)
Q Consensus 80 ~~l~Vp---VG~~lLGRViD~lG~PLDg~g--~i~~~~~~-pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~g 153 (478)
T Consensus 98 ~~L~~~qlP~G~~LLGRVld~~G~PiD~~~~~~~~~~~~~~~l~~~~~nPl~R~~i~~~~~tGVR~iD~LLTvGkGQR~G 177 (455)
T TIGR01026 98 EGLSIKQLPVGDGLLGRVLDGLGKPIDGKGKGFLDNVETEPALITAPINPLKREPIREILSTGVRSIDGLLTVGKGQRIG 177 (455)
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEECCCEEECCCCCCCCCCCEE
T ss_conf 25455743368764024485468711377776665430125524689886676300021003645310103555665013
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHH
Q ss_conf 36756666248999999988505788526876216434599999985424420012223444332316999717668967
Q gi|254780615|r 154 LFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPG 233 (478)
Q Consensus 154 Ifgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~ 233 (478)
T Consensus 178 IFAGSGVGKStLlGMIARn--~~~ADv~ViALIGERGREV~EFIE~------------~LG~EGLkrSV~VVaTSD~SPl 243 (455)
T TIGR01026 178 IFAGSGVGKSTLLGMIARN--NTEADVNVIALIGERGREVKEFIEK------------DLGEEGLKRSVVVVATSDQSPL 243 (455)
T ss_pred EEECCCCCHHHHHHHHHHC--CCCCCEEEEEEECCCCCCHHHHHHH------------HCCCCCCCEEEEEEECCCCCHH
T ss_conf 5503760034456676300--6789827998643777741578863------------1365666011799836886388
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHC--CCCCC-CEE
Q ss_conf 877777778776899986699679997155999876012455311441011012235666578887631--77765-325
Q gi|254780615|r 234 ARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERIT--TTLKG-SIT 310 (478)
Q Consensus 234 ~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag--~~~~G-SIT 310 (478)
T Consensus 244 ~R~~GAy~At~iAEYFrdqGk~VlLlmDSvTRfA~AqREiGLA~GEPP~~kGYtPSVF~~LP~LlERaG~G~~~~GGSIT 323 (455)
T TIGR01026 244 LRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSLLPRLLERAGKGASGKGGSIT 323 (455)
T ss_pred HHHHHHHEEHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf 88732640025435465218705620202789988988998743777777777854889989999760687357795798
Q ss_pred EEEEEEECCCCC-CCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 666543047664-4105899997503425641156631886753223554311162012899999999999999989989
Q gi|254780615|r 311 SVQAIYVPADDL-TDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSL 389 (478)
Q Consensus 311 ~~~tV~~~~dD~-~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el 389 (478)
T Consensus 324 AFYTVLVeGDD~s~ePiAD~~r~ILDGHIVLSR~LA~~g~YPAIdvl~S~SR~~~-~i~s~~~~~~~~~fR~lLs~y~~~ 402 (455)
T TIGR01026 324 AFYTVLVEGDDLSNEPIADSVRGILDGHIVLSRALADRGHYPAIDVLASISRLMT-AIVSEEHKKAARKFRELLSKYKEN 402 (455)
T ss_pred EEEEEEECCCCCCCCCCCCCCCEEECCCEEECHHHHHCCCCCCCCHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8888864156788777243102255153552458861789786375556889887-407488999999999999988761
Q ss_pred HHHHHHHCCCCCCHHH-HHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHH
Q ss_conf 9999973655699889-999999999999834997110000578973615999999999997
Q gi|254780615|r 390 QDIIAILGMDELSEED-KLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLV 450 (478)
Q Consensus 390 ~~~i~~~g~~~l~~~~-~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il 450 (478)
T Consensus 403 EdLiriG~Y~~GSd~e~D~AI~~~~~le~FL~Qg~~E----------~~~fE~s~~~L~~I~ 454 (455)
T TIGR01026 403 EDLIRIGAYKKGSDKELDKAIAKYPKLERFLKQGINE----------KVNFEESLQQLEEIL 454 (455)
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC----------CCHHHHHHHHHHHHC
T ss_conf 3231220255878866899985799988875479434----------630899999998734