HHsearch alignment for GI: 254780615 and conserved domain: TIGR01026

>TIGR01026 fliI_yscN ATPase FliI/YscN family; InterPro: IPR005714 Proteins in this entry show extensive homology to the ATP synthase F1 beta subunit, and are involved in type III protein secretion. They fall into the two separate functional groups outlined below. The first group, exemplified by the Salmonella typhimurium FliI protein (P26465 from SWISSPROT), is needed for flagellar assembly. Most structural components of the bacterial flagellum are translocated through the central channel of the growing flagellar structure by the type III flagellar protein-export apparatus in an ATPase-driven manner, to be assembled at the growing end. FliI is the ATPase that couples ATP hydrolysis to the translocation reaction , . The second group couples ATP hydrolysis to protein translocation in non-flagellar type III secretion systems. Often these systems are involved in virulence and pathogenicity. YscN (P40290 from SWISSPROT) from pathogenic Yersinia species, for example, energises the injection of antihost factors directly into eukaryotic cells, thus overcoming host defences .; GO: 0016887 ATPase activity, 0009058 biosynthetic process, 0015031 protein transport, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=1069.08  Aligned_cols=420  Identities=30%  Similarity=0.502  Sum_probs=397.6

Q ss_pred             CCCCCCEEEEEEECCEEEEEECCCCCCCCCEEEECCC-CCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECC----
Q ss_conf             5653413899995578999816665231418998169-95599999987089879999814878887888889779----
Q gi|254780615|r    5 AKTESVGRIQQIMGAVVDVVFVNSLPPIFSSLETSDK-GSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTG----   79 (478)
Q Consensus         5 ~~~~~~GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~-g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg----   79 (478)
T Consensus        19 ~~~~~~G~v~~v~Gl~~ea~gp~~~vG~~c~I~~~g~~~~~~~~EVVGf~~-~~v~LmPy~~~~G~~~G~~V~~~~isae   97 (455)
T TIGR01026        19 EAVKRVGRVTKVKGLLIEAVGPQASVGDLCLIERKGSEGKEVVAEVVGFNG-EKVLLMPYEEVEGVEPGSKVLAKNISAE   97 (455)
T ss_pred             CCEEEEEEEEEEEEEEEEEECCCCCCCCEEEEEEECCCCCEEEEEEEEEEC-CEEEECCCCCCCCCCCCCEEEEECCCCC
T ss_conf             630257899998526898524776677778999737898779999885206-7567523654443353452332043300


Q ss_pred             CEEEEE---CCHHHHHHHHHHHHHHCCCCC--CCCCHHHH-CCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             848988---592376558878752301678--75300110-023454441000013420002311002355702154100
Q gi|254780615|r   80 TQITVP---VGEATLGRIMNVIGEPVDDQG--AIISSEKR-AIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIG  153 (478)
Q Consensus        80 ~~l~Vp---VG~~lLGRViD~lG~PLDg~g--~i~~~~~~-pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~g  153 (478)
T Consensus        98 ~~L~~~qlP~G~~LLGRVld~~G~PiD~~~~~~~~~~~~~~~l~~~~~nPl~R~~i~~~~~tGVR~iD~LLTvGkGQR~G  177 (455)
T TIGR01026        98 EGLSIKQLPVGDGLLGRVLDGLGKPIDGKGKGFLDNVETEPALITAPINPLKREPIREILSTGVRSIDGLLTVGKGQRIG  177 (455)
T ss_pred             CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEECCCEEECCCCCCCCCCCEE
T ss_conf             25455743368764024485468711377776665430125524689886676300021003645310103555665013


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHH
Q ss_conf             36756666248999999988505788526876216434599999985424420012223444332316999717668967
Q gi|254780615|r  154 LFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPG  233 (478)
Q Consensus       154 Ifgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~  233 (478)
T Consensus       178 IFAGSGVGKStLlGMIARn--~~~ADv~ViALIGERGREV~EFIE~------------~LG~EGLkrSV~VVaTSD~SPl  243 (455)
T TIGR01026       178 IFAGSGVGKSTLLGMIARN--NTEADVNVIALIGERGREVKEFIEK------------DLGEEGLKRSVVVVATSDQSPL  243 (455)
T ss_pred             EEECCCCCHHHHHHHHHHC--CCCCCEEEEEEECCCCCCHHHHHHH------------HCCCCCCCEEEEEEECCCCCHH
T ss_conf             5503760034456676300--6789827998643777741578863------------1365666011799836886388


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHC--CCCCC-CEE
Q ss_conf             877777778776899986699679997155999876012455311441011012235666578887631--77765-325
Q gi|254780615|r  234 ARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERIT--TTLKG-SIT  310 (478)
Q Consensus       234 ~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag--~~~~G-SIT  310 (478)
T Consensus       244 ~R~~GAy~At~iAEYFrdqGk~VlLlmDSvTRfA~AqREiGLA~GEPP~~kGYtPSVF~~LP~LlERaG~G~~~~GGSIT  323 (455)
T TIGR01026       244 LRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSLLPRLLERAGKGASGKGGSIT  323 (455)
T ss_pred             HHHHHHHEEHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf             88732640025435465218705620202789988988998743777777777854889989999760687357795798


Q ss_pred             EEEEEEECCCCC-CCHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             666543047664-4105899997503425641156631886753223554311162012899999999999999989989
Q gi|254780615|r  311 SVQAIYVPADDL-TDPAPATSFTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSL  389 (478)
Q Consensus       311 ~~~tV~~~~dD~-~dpi~~~~~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el  389 (478)
T Consensus       324 AFYTVLVeGDD~s~ePiAD~~r~ILDGHIVLSR~LA~~g~YPAIdvl~S~SR~~~-~i~s~~~~~~~~~fR~lLs~y~~~  402 (455)
T TIGR01026       324 AFYTVLVEGDDLSNEPIADSVRGILDGHIVLSRALADRGHYPAIDVLASISRLMT-AIVSEEHKKAARKFRELLSKYKEN  402 (455)
T ss_pred             EEEEEEECCCCCCCCCCCCCCCEEECCCEEECHHHHHCCCCCCCCHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8888864156788777243102255153552458861789786375556889887-407488999999999999988761


Q ss_pred             HHHHHHHCCCCCCHHH-HHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHHH
Q ss_conf             9999973655699889-999999999999834997110000578973615999999999997
Q gi|254780615|r  390 QDIIAILGMDELSEED-KLVVARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGLV  450 (478)
Q Consensus       390 ~~~i~~~g~~~l~~~~-~~~i~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~il  450 (478)
T Consensus       403 EdLiriG~Y~~GSd~e~D~AI~~~~~le~FL~Qg~~E----------~~~fE~s~~~L~~I~  454 (455)
T TIGR01026       403 EDLIRIGAYKKGSDKELDKAIAKYPKLERFLKQGINE----------KVNFEESLQQLEEIL  454 (455)
T ss_pred             HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC----------CCHHHHHHHHHHHHC
T ss_conf             3231220255878866899985799988875479434----------630899999998734