HHsearch alignment for GI: 254780615 and conserved domain: TIGR02237
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.25 E-value=0.023 Score=34.35 Aligned_cols=165 Identities=16% Similarity=0.173 Sum_probs=94.3
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-----EECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 003675666624899999998850578852687-----621643459999998542442001222344433231699971
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-----GVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYG 226 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~-----~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~ 226 (478)
T Consensus 15 TQiYGp~G~GKTn~c~~~a~~a~-~~Gk~v~YiDTEGGLS~ER~~q~~~-------~~-------~~D~e~~~~~~iv~~ 79 (223)
T TIGR02237 15 TQIYGPPGSGKTNICLILAVNAA-RQGKKVVYIDTEGGLSPERFKQIAE-------DR-------ALDPERVLSNVIVFE 79 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-HCCCCEEEEECCCCCHHHHHHHHHH-------CC-------CCCHHHHHCCEEEEC
T ss_conf 89875899867899999999998-6189589996289832899999863-------05-------889888841535523
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHC-C-CCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCC
Q ss_conf 76689678777777787768999866-9-967999715599987601245531144101101223566657888763177
Q gi|254780615|r 227 QMNEPPGARSRVALTGLTVAEHFRDQ-G-QDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTT 304 (478)
Q Consensus 227 ~~~~~~~~r~~~~~~a~tiAEyfrd~-g-~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~ 304 (478)
T Consensus 80 ~~~f~--eQ----~~ai~~~~~~~~~~G~~~~LvVvDs~t~~YRle~~-----~d~nk~~~~~~~l~~Ql~~Ll~lArk~ 148 (223)
T TIGR02237 80 VFDFD--EQ----EVAIQKTSKLIDRDGDKADLVVVDSFTALYRLERS-----DDRNKQISLNRELARQLTLLLSLARKK 148 (223)
T ss_pred CCCHH--HH----HHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 53567--89----99999999998606883314888153345420257-----860256799999999999999998764
Q ss_pred CC-CCEE-EEEEEEECC-CCCCCHHHHHHHHHCCCEEE-EEH
Q ss_conf 76-5325-666543047-66441058999975034256-411
Q gi|254780615|r 305 LK-GSIT-SVQAIYVPA-DDLTDPAPATSFTHLDATTV-LSR 342 (478)
Q Consensus 305 ~~-GSIT-~~~tV~~~~-dD~~dpi~~~~~si~Dg~iv-Lsr 342 (478)
T Consensus 149 ~~AVviTNQvy~d~~~gG~~~~~P~GG~~L~h~~K~i~rLE~ 190 (223)
T TIGR02237 149 DLAVVITNQVYTDVNNGGSETLRPLGGHLLEHWSKVILRLEK 190 (223)
T ss_pred CCCEEEEEEEEEEECCCCCCEEEECCCHHHHHHHCEEEEEEC
T ss_conf 997899711588637797320100331134311021335644