HHsearch alignment for GI: 254780615 and conserved domain: TIGR02759

>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128 The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM) , .; GO: 0000746 conjugation.
Probab=93.55  E-value=0.055  Score=31.90  Aligned_cols=43  Identities=21%  Similarity=0.362  Sum_probs=30.7

Q ss_pred             CCCCCCCC---CCCCEECCCCCCCCHHHHHHHHHHHHHHCCCC-CEEE
Q ss_conf             02355702---15410036756666248999999988505788-5268
Q gi|254780615|r  140 IDLISPYQ---KGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVF  183 (478)
Q Consensus       140 ID~l~pig---~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~-v~V~  183 (478)
T Consensus       196 i~g~~l~K~~sE~Qh~L~~GTtG~GKs~~lr~LL~~iR~r-Gd~AIiY  242 (613)
T TIGR02759       196 IGGLPLIKKGSEVQHILIHGTTGSGKSVALRKLLRWIRQR-GDRAIIY  242 (613)
T ss_pred             ECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHC-CCEEEEE
T ss_conf             0780678777742252664541743899999999999863-9858998