HHsearch alignment for GI: 254780615 and conserved domain: TIGR02759
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128 The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM) , .; GO: 0000746 conjugation.
Probab=93.55 E-value=0.055 Score=31.90 Aligned_cols=43 Identities=21% Similarity=0.362 Sum_probs=30.7
Q ss_pred CCCCCCCC---CCCCEECCCCCCCCHHHHHHHHHHHHHHCCCC-CEEE
Q ss_conf 02355702---15410036756666248999999988505788-5268
Q gi|254780615|r 140 IDLISPYQ---KGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVF 183 (478)
Q Consensus 140 ID~l~pig---~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~-v~V~ 183 (478)
T Consensus 196 i~g~~l~K~~sE~Qh~L~~GTtG~GKs~~lr~LL~~iR~r-Gd~AIiY 242 (613)
T TIGR02759 196 IGGLPLIKKGSEVQHILIHGTTGSGKSVALRKLLRWIRQR-GDRAIIY 242 (613)
T ss_pred ECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHC-CCEEEEE
T ss_conf 0780678777742252664541743899999999999863-9858998