HHsearch alignment for GI: 254780615 and conserved domain: TIGR03345
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.23 E-value=0.063 Score=31.49 Aligned_cols=149 Identities=20% Similarity=0.250 Sum_probs=79.6
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCC-----CCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 003675666624899999998850578-----852687621643459999998542442001222344433231699971
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNVAKAHG-----GYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYG 226 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~~~~~~-----~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~ 226 (478)
T Consensus 211 PiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~s---------------------------------LDlg~LvAG 257 (852)
T TIGR03345 211 PILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS---------------------------------LDLGLLQAG 257 (852)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEE---------------------------------EEHHHHHHC
T ss_conf 74657999879999999999997699986774385678---------------------------------678888640
Q ss_pred CCCCCHH-HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf 7668967-877777778776899986699679997155999876012455311441011012235666578887631777
Q gi|254780615|r 227 QMNEPPG-ARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL 305 (478)
Q Consensus 227 ~~~~~~~-~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~ 305 (478)
T Consensus 258 tkyRGeFEeRlk------~ii~ei~~~~~~iILFIDEiHtlvGAG~~--------------~G~~--DaaNiLKPa--La 313 (852)
T TIGR03345 258 ASVKGEFENRLK------SVIDEVKASPQPIILFIDEAHTLIGAGGQ--------------AGQG--DAANLLKPA--LA 313 (852)
T ss_pred CCCCCHHHHHHH------HHHHHHHHCCCCEEEEEEHHHHHCCCCCC--------------CCCC--CHHHHHHHH--HH
T ss_conf 357635999999------99999984899769996348775289988--------------8862--278875178--73
Q ss_pred CCCEEEEEEEEE-------CC----------CCCCCHHHHHHHHHCCCEE--------------------EEEHHHHHCC
Q ss_conf 653256665430-------47----------6644105899997503425--------------------6411566318
Q gi|254780615|r 306 KGSITSVQAIYV-------PA----------DDLTDPAPATSFTHLDATT--------------------VLSRQISEKG 348 (478)
Q Consensus 306 ~GSIT~~~tV~~-------~~----------dD~~dpi~~~~~si~Dg~i--------------------vLsr~la~~g 348 (478)
T Consensus 314 rGelr~IGATT~~EYrk~iEkD~AL~RRFq~V~V~EPs~eeti~IL~glk~~yE~hH~V~i~d~Ai~aAv~LS~RYI~dR 393 (852)
T TIGR03345 314 RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGR 393 (852)
T ss_pred CCCCEEEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCC
T ss_conf 78734998357899988864268899624755279998799999999879998554796870899999999987215545
Q ss_pred CCC--CCCCCC
Q ss_conf 867--532235
Q gi|254780615|r 349 IYP--AIDPLD 357 (478)
Q Consensus 349 ~~P--AId~~~ 357 (478)
T Consensus 394 ~LPDKAIDLlD 404 (852)
T TIGR03345 394 QLPDKAVSLLD 404 (852)
T ss_pred CCCHHHHHHHH
T ss_conf 58427899999