HHsearch alignment for GI: 254780615 and conserved domain: TIGR03345

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.23  E-value=0.063  Score=31.49  Aligned_cols=149  Identities=20%  Similarity=0.250  Sum_probs=79.6

Q ss_pred             EECCCCCCCCHHHHHHHHHHHHHHCCC-----CCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             003675666624899999998850578-----852687621643459999998542442001222344433231699971
Q gi|254780615|r  152 IGLFGGAGVGKTVLIMELINNVAKAHG-----GYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYG  226 (478)
Q Consensus       152 ~gIfgg~GvGKT~l~~~~i~n~~~~~~-----~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~  226 (478)
T Consensus       211 PiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~s---------------------------------LDlg~LvAG  257 (852)
T TIGR03345       211 PILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS---------------------------------LDLGLLQAG  257 (852)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHCCEEEE---------------------------------EEHHHHHHC
T ss_conf             74657999879999999999997699986774385678---------------------------------678888640


Q ss_pred             CCCCCHH-HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf             7668967-877777778776899986699679997155999876012455311441011012235666578887631777
Q gi|254780615|r  227 QMNEPPG-ARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTL  305 (478)
Q Consensus       227 ~~~~~~~-~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~  305 (478)
T Consensus       258 tkyRGeFEeRlk------~ii~ei~~~~~~iILFIDEiHtlvGAG~~--------------~G~~--DaaNiLKPa--La  313 (852)
T TIGR03345       258 ASVKGEFENRLK------SVIDEVKASPQPIILFIDEAHTLIGAGGQ--------------AGQG--DAANLLKPA--LA  313 (852)
T ss_pred             CCCCCHHHHHHH------HHHHHHHHCCCCEEEEEEHHHHHCCCCCC--------------CCCC--CHHHHHHHH--HH
T ss_conf             357635999999------99999984899769996348775289988--------------8862--278875178--73


Q ss_pred             CCCEEEEEEEEE-------CC----------CCCCCHHHHHHHHHCCCEE--------------------EEEHHHHHCC
Q ss_conf             653256665430-------47----------6644105899997503425--------------------6411566318
Q gi|254780615|r  306 KGSITSVQAIYV-------PA----------DDLTDPAPATSFTHLDATT--------------------VLSRQISEKG  348 (478)
Q Consensus       306 ~GSIT~~~tV~~-------~~----------dD~~dpi~~~~~si~Dg~i--------------------vLsr~la~~g  348 (478)
T Consensus       314 rGelr~IGATT~~EYrk~iEkD~AL~RRFq~V~V~EPs~eeti~IL~glk~~yE~hH~V~i~d~Ai~aAv~LS~RYI~dR  393 (852)
T TIGR03345       314 RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGR  393 (852)
T ss_pred             CCCCEEEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCC
T ss_conf             78734998357899988864268899624755279998799999999879998554796870899999999987215545


Q ss_pred             CCC--CCCCCC
Q ss_conf             867--532235
Q gi|254780615|r  349 IYP--AIDPLD  357 (478)
Q Consensus       349 ~~P--AId~~~  357 (478)
T Consensus       394 ~LPDKAIDLlD  404 (852)
T TIGR03345       394 QLPDKAVSLLD  404 (852)
T ss_pred             CCCHHHHHHHH
T ss_conf             58427899999