HHsearch alignment for GI: 254780615 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.16 E-value=0.18 Score=28.52 Aligned_cols=39 Identities=21% Similarity=0.384 Sum_probs=24.8
Q ss_pred CCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 5410036756666248999999988505788526876216
Q gi|254780615|r 149 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE 188 (478)
Q Consensus 149 Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGE 188 (478)
T Consensus 38 ~~~l~i~G~~GsGKTHLl~a~~~~~-~~~~~~~~yl~~~~ 76 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAA-EERGKSAIYLPLAE 76 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH-HCCCCCEEEECHHH
T ss_conf 8869998999998899999999998-62699579952999