HHsearch alignment for GI: 254780615 and conserved domain: TIGR03497
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=0 Score=940.98 Aligned_cols=411 Identities=32% Similarity=0.517 Sum_probs=391.4
Q ss_pred EEEEEEECCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEECCCEEEEECCHHH
Q ss_conf 38999955789998166652314189981699559999998708987999981487888788888977984898859237
Q gi|254780615|r 11 GRIQQIMGAVVDVVFVNSLPPIFSSLETSDKGSRIVFEVVQHLGEKTVRCIAMSRTDGLSRGDCVIDTGTQITVPVGEAT 90 (478)
Q Consensus 11 GrV~~V~G~vvev~g~~~~~~i~~~i~~~~~g~~i~~EVV~~l~e~~V~~i~l~~t~GI~~G~~V~~tg~~l~VpVG~~l 90 (478)
T Consensus 1 GrV~~i~G~~iev~g~~~~iGe~c~I~~~~-g~~i~aEVv~~-~~~~~~l~~~~~t~Gi~~G~~V~~tg~~~~vpvg~~l 78 (413)
T TIGR03497 1 GKVTRVIGLTIESKGPKAKIGELCSILTKG-GKPVLAEVVGF-KEENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGKGL 78 (413)
T ss_pred CEEEEEEEEEEEEEECCCCCCCEEEEEECC-CCEEEEEEEEE-CCCEEEEEEECCCCCCCCCCEEEECCCCCEEECCCCC
T ss_conf 989999827999980799856759999489-98899999998-2997999993698788999999989997478868430
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHH
Q ss_conf 65588787523016787530011002345444100001342000231100235570215410036756666248999999
Q gi|254780615|r 91 LGRIMNVIGEPVDDQGAIISSEKRAIHQPSPSYTEQSTDASILTTGIKVIDLISPYQKGGKIGLFGGAGVGKTVLIMELI 170 (478)
Q Consensus 91 LGRViD~lG~PLDg~g~i~~~~~~pi~~~~p~~~~R~~i~e~L~TGIkaID~l~pig~Gqr~gIfgg~GvGKT~l~~~~i 170 (478)
T Consensus 79 LGRV~d~~G~PlDg~~~~~~~~~~~i~~~~p~p~~R~~i~e~l~TGIraID~l~pigrGQRigIfag~GvGKt~Ll~~ia 158 (413)
T TIGR03497 79 LGRVLDGLGRPLDGEGPIIGEEPYPLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIA 158 (413)
T ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 56887767665589867777611444468996344067883420386542165761137544210589987769999999
Q ss_pred HHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 98850578852687621643459999998542442001222344433231699971766896787777777877689998
Q gi|254780615|r 171 NNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFR 250 (478)
Q Consensus 171 ~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfr 250 (478)
T Consensus 159 ~~---~~adv~Vi~liGERgrEv~ef~~~~l------------~~~~l~rtvvv~atsd~p~~~r~~a~~~a~aiAEyfr 223 (413)
T TIGR03497 159 RN---AKADINVIALIGERGREVRDFIEKDL------------GEEGLKRSVVVVATSDQPALMRLKAAFTATAIAEYFR 223 (413)
T ss_pred HH---HCCCCCEEEEEEEECHHHHHHHHHHH------------CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 87---43785238886332289999999863------------1256421599984587887999887746327899998
Q ss_pred HCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHHHHH
Q ss_conf 66996799971559998760124553114410110122356665788876317776532566654304766441058999
Q gi|254780615|r 251 DQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSITSVQAIYVPADDLTDPAPATS 330 (478)
Q Consensus 251 d~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT~~~tV~~~~dD~~dpi~~~~ 330 (478)
T Consensus 224 d~Gk~VLl~~Dsltr~A~A~REisl~~ge~P~~~gyp~~~~s~l~~l~ERag~~~~GSIT~~~~v~~~~dD~tdPi~d~~ 303 (413)
T TIGR03497 224 DQGKDVLLMMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGNSQKGSITGFYTVLVDGDDMNEPIADAV 303 (413)
T ss_pred HCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCHHHH
T ss_conf 67996899973712988999999986589998878685499887898886138999854667789712887677716667
Q ss_pred HHHCCCEEEEEHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HHHHHH
Q ss_conf 9750342564115663188675322355431116201289999999999999998998999999736556998-899999
Q gi|254780615|r 331 FTHLDATTVLSRQISEKGIYPAIDPLDSNSSMLEIDIVGQEHYDVARRVQEILQRYKSLQDIIAILGMDELSE-EDKLVV 409 (478)
Q Consensus 331 ~si~Dg~ivLsr~la~~g~~PAId~~~S~Sr~~~~~i~~~~h~~~a~~~r~~l~~y~el~~~i~~~g~~~l~~-~~~~~i 409 (478)
T Consensus 304 ~si~DG~ivLsr~la~~g~yPaIdvl~S~SR~~~-~~~~~~h~~~a~~~r~~~a~y~e~~~li~~g~y~~g~d~~~d~ai 382 (413)
T TIGR03497 304 RGILDGHIVLSRELAAKNHYPAIDVLASVSRVMN-EIVSEEHKELAGKLRELLAVYKEAEDLINIGAYKRGSNPKIDEAI 382 (413)
T ss_pred HHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 5750618998688986699998186424655343-115699999999999999988999999996286679998899999
Q ss_pred HHHHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHHHHH
Q ss_conf 9999999983499711000057897361599999999999
Q gi|254780615|r 410 ARARKLERFMSQPFHVAESFTGLPGKFVSLEETIRGFKGL 449 (478)
Q Consensus 410 ~r~~~i~~fL~Qp~~~~e~ft~~~g~~v~~~eti~~~~~i 449 (478)
T Consensus 383 ~~~~~i~~fL~Q~~~----------e~~~~~~t~~~l~~l 412 (413)
T TIGR03497 383 RYIEKINSFLKQGID----------EKFTFEETVQLLKTL 412 (413)
T ss_pred HHHHHHHHHCCCCCC----------CCCCHHHHHHHHHHH
T ss_conf 989999997389999----------997999999999986