HHsearch alignment for GI: 254780615 and conserved domain: cd00267
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.69 E-value=0.031 Score=33.52 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=26.7
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 23557021541003675666624899999998
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
T Consensus 17 ~i~~~i~~Ge~~~i~G~nGaGKSTLl~~l~gl 48 (157)
T cd00267 17 NVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL 48 (157)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 11789879979999878899989999999588