HHsearch alignment for GI: 254780615 and conserved domain: cd00983
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.53 E-value=0.00024 Score=47.43 Aligned_cols=110 Identities=25% Similarity=0.369 Sum_probs=74.8
Q ss_pred CCCCCCCCCCCCCCC---CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCC
Q ss_conf 200023110023557---02154100367566662489999999885057885268762164345999999854244200
Q gi|254780615|r 131 SILTTGIKVIDLISP---YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNI 207 (478)
Q Consensus 131 e~L~TGIkaID~l~p---ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~ 207 (478)
T Consensus 34 ~~i~TGs~~lD~alg~GGiP~GRivei~G~essGKTtlal~~ia~aQk~-gg~~~~iDa-E~a~-d~~~a~~l---GV-- 105 (325)
T cd00983 34 EVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKL-GGTVAFIDA-EHAL-DPVYAKKL---GV-- 105 (325)
T ss_pred CEECCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEEH-HHCC-CHHHHHHC---CC--
T ss_conf 3462681999999758996688089998898777999999999998735-983999962-5425-98999980---99--
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 122234443323169997176689678777777787768999866996799971559998
Q gi|254780615|r 208 DPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFT 267 (478)
Q Consensus 208 ~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a 267 (478)
T Consensus 106 ---------D~~~--l~~~qp~--------~~Eq~l~i~~~li~s~~~dliViDSvaal~ 146 (325)
T cd00983 106 ---------DLDN--LLISQPD--------TGEQALEIADSLVRSGAVDLIVVDSVAALV 146 (325)
T ss_pred ---------CHHH--EEEECCC--------HHHHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf ---------8467--5896663--------899999999997515887679981511236