HHsearch alignment for GI: 254780615 and conserved domain: cd01124
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.07 E-value=8.5e-05 Score=50.35 Aligned_cols=166 Identities=11% Similarity=0.057 Sum_probs=83.1
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE-CCCC
Q ss_conf 003675666624899999998850578852687621643459999998542442001222344433231699971-7668
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVNIDPRKNNGSAVGSKCSLLYG-QMNE 230 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~~~~~~~~~~~~~~~tv~v~~-~~~~ 230 (478)
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~-~ge~~lyis~eE~~~~l~~---~~~~~g~d~~--~~~~~---g~l~i~~~~~~~~ 72 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-RGEPGLYVTLEESPEELIE---NAESLGWDLE--RLEDE---GLLAIVDADPDEI 72 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCCHHHHHH---HHHHCCCCHH--HHHHC---CCEEEEECCCCCC
T ss_conf 158768999999999999999987-6997899995079999999---9998399858--98645---8568996262002
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 96787777777877689998669967999715599987601245531144101101223566657888763177765325
Q gi|254780615|r 231 PPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFTQANSEISALLGRIPSAVGYQSTLALEMGELQERITTTLKGSIT 310 (478)
Q Consensus 231 ~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a~A~rEisl~~g~~P~~~gYp~~~f~~~~~l~ERag~~~~GSIT 310 (478)
T Consensus 73 ~~~~~~~~~~l~~~i~~~i~~~~~~~-vVIDSi~~l~~~~~----------~--~~~~~~~~l~-~~l~~------~~~t 132 (187)
T cd01124 73 GPAESSLRLELIQRLKDAIEEFKAKR-VVIDSVSGLLLMEQ----------S--TARLEIRRLL-FALKR------FGVT 132 (187)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCE-EEECCHHHHHHCCH----------H--HHHHHHHHHH-HHHHH------CCCC
T ss_conf 20333236789999999999849989-99948688752566----------6--6899999999-99997------6996
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHHHHH
Q ss_conf 666543047664410589999750342564115663
Q gi|254780615|r 311 SVQAIYVPADDLTDPAPATSFTHLDATTVLSRQISE 346 (478)
Q Consensus 311 ~~~tV~~~~dD~~dpi~~~~~si~Dg~ivLsr~la~ 346 (478)
T Consensus 133 ~ll~~e~~~~~~~~~~~~~~~~l~DgiI~L~~~~~~ 168 (187)
T cd01124 133 TLLTSEQSGLEGTGFGGGDVEYLVDGVIRLRLDEEG 168 (187)
T ss_pred EEEEEEECCCCCCCCCCCCEEEEEEEEEEEEEEECC
T ss_conf 899997425667667888477997899999788049