HHsearch alignment for GI: 254780615 and conserved domain: cd01125

>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

Probab=91.50  E-value=1  Score=23.63  Aligned_cols=39  Identities=26%  Similarity=0.239  Sum_probs=26.6

Q ss_pred             ECCCCCCCCHHHHHHHHHHHHHHCCCC----------CEEEEEECCCHH
Q ss_conf             036756666248999999988505788----------526876216434
Q gi|254780615|r  153 GLFGGAGVGKTVLIMELINNVAKAHGG----------YSVFAGVGERTR  191 (478)
Q Consensus       153 gIfgg~GvGKT~l~~~~i~n~~~~~~~----------v~V~~~iGER~r  191 (478)
T Consensus         5 ~l~g~gG~GKS~lal~lAl~vA~G~~~~g~~~~~~~~G~Vly~~~Ed~~   53 (239)
T cd01125           5 ALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPR   53 (239)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCH
T ss_conf             9980899888999999999997599656898546877619999788998