HHsearch alignment for GI: 254780615 and conserved domain: cd01127

>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=90.60  E-value=0.31  Score=26.98  Aligned_cols=41  Identities=22%  Similarity=0.351  Sum_probs=28.5

Q ss_pred             CCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf             15410036756666248999999988505788526876216
Q gi|254780615|r  148 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE  188 (478)
Q Consensus       148 ~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGE  188 (478)
T Consensus        41 e~~H~lv~G~tGsGKT~~i~~li~~~~~rg~~~II~DpkGe   81 (410)
T cd01127          41 EEAHTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGG   81 (410)
T ss_pred             HHCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCH
T ss_conf             02747998899998899999999999986990999958854