HHsearch alignment for GI: 254780615 and conserved domain: cd01127
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=90.60 E-value=0.31 Score=26.98 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=28.5
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 15410036756666248999999988505788526876216
Q gi|254780615|r 148 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE 188 (478)
Q Consensus 148 ~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGE 188 (478)
T Consensus 41 e~~H~lv~G~tGsGKT~~i~~li~~~~~rg~~~II~DpkGe 81 (410)
T cd01127 41 EEAHTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGG 81 (410)
T ss_pred HHCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCH
T ss_conf 02747998899998899999999999986990999958854