HHsearch alignment for GI: 254780615 and conserved domain: cd01393
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.45 E-value=0.00094 Score=43.49 Aligned_cols=120 Identities=20% Similarity=0.195 Sum_probs=66.1
Q ss_pred CCCCCCCCCCCCC--CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCC-----CCCEEEEEECCCHHHHHHHHHHHHHCCC
Q ss_conf 0023110023557--02154100367566662489999999885057-----8852687621643459999998542442
Q gi|254780615|r 133 LTTGIKVIDLISP--YQKGGKIGLFGGAGVGKTVLIMELINNVAKAH-----GGYSVFAGVGERTREGNDLYHEMIDSKV 205 (478)
Q Consensus 133 L~TGIkaID~l~p--ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~-----~~v~V~~~iGER~rEv~e~~~e~~~~~~ 205 (478)
T Consensus 1 isTG~~~lD~~LgGGip~G~ItEi~G~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyIDt-E~~f-~~~rl~~i~~~~~ 78 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDT-EGAF-RPERLVQLAVRFG 78 (226)
T ss_pred CCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC-CCCC-CHHHHHHHHHHHC
T ss_conf 9887478998857998888399999999998999999999998542211699961999955-7753-1999999987603
Q ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 00122234443323169997176689678777777787768999866996799971559998
Q gi|254780615|r 206 NIDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFT 267 (478)
Q Consensus 206 ~~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a 267 (478)
T Consensus 79 ------~~~~~~l~~i~~~~~~-~~---e~---~~~~~~~l~~~~~~~~v~liViDSi~al~ 127 (226)
T cd01393 79 ------LDPEEVLDNIYVARPY-NG---EQ---QLEIVEELERIMSSGRVDLVVVDSVAALF 127 (226)
T ss_pred ------CCHHHHHHHEEEECCC-CH---HH---HHHHHHHHHHHHHCCCCEEEEEECCCEEC
T ss_conf ------2667764333684379-99---99---99999999987524784289993220011