HHsearch alignment for GI: 254780615 and conserved domain: cd01882
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=92.51 E-value=0.15 Score=29.07 Aligned_cols=26 Identities=42% Similarity=0.709 Sum_probs=22.7
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 00367566662489999999885057
Q gi|254780615|r 152 IGLFGGAGVGKTVLIMELINNVAKAH 177 (478)
Q Consensus 152 ~gIfgg~GvGKT~l~~~~i~n~~~~~ 177 (478)
T Consensus 42 VavvGPpgvGKtTLiksLvk~ytk~~ 67 (225)
T cd01882 42 VAVVGPPGVGKTTLIKSLVKNYTKQN 67 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99989899778899999999985443