HHsearch alignment for GI: 254780615 and conserved domain: cd03219
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=91.99 E-value=0.09 Score=30.50 Aligned_cols=36 Identities=31% Similarity=0.472 Sum_probs=27.7
Q ss_pred CCCCCC-CCCCCCCCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 311002-355702154100367566662489999999
Q gi|254780615|r 136 GIKVID-LISPYQKGGKIGLFGGAGVGKTVLIMELIN 171 (478)
Q Consensus 136 GIkaID-~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~ 171 (478)
T Consensus 12 ~~~aL~~vsl~i~~Gei~gliG~nGaGKSTL~~~i~G 48 (236)
T cd03219 12 GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 9998723389988998999998999739999999967