HHsearch alignment for GI: 254780615 and conserved domain: cd03224
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.15 E-value=0.021 Score=34.63 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=28.4
Q ss_pred CCCC-CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 1100-23557021541003675666624899999998
Q gi|254780615|r 137 IKVI-DLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 137 IkaI-D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
T Consensus 13 ~~~L~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl 49 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 9998140899889989999999998599999999779