HHsearch alignment for GI: 254780615 and conserved domain: cd03230
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.07 E-value=0.05 Score=32.19 Aligned_cols=40 Identities=35% Similarity=0.492 Sum_probs=29.2
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCE
Q ss_conf 23557021541003675666624899999998850578852
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS 181 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~ 181 (478)
T Consensus 18 ~vsl~i~~Gei~gl~G~NGaGKSTLl~~i~Gl-~~p~~G~i 57 (173)
T cd03230 18 DISLTVEKGEIYGLLGPNGAGKTTLIKIILGL-LKPDSGEI 57 (173)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHHHCC-CCCCCCEE
T ss_conf 20878879939999878997999999999768-57787889