HHsearch alignment for GI: 254780615 and conserved domain: cd03238
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.55 E-value=0.043 Score=32.61 Aligned_cols=31 Identities=23% Similarity=0.190 Sum_probs=26.3
Q ss_pred CCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 3557021541003675666624899999998
Q gi|254780615|r 142 LISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 142 ~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
T Consensus 14 isl~i~~Ge~~~iiG~nGsGKSTLl~~~~~~ 44 (176)
T cd03238 14 LDVSIPLNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 4878889989999999999899999988876