HHsearch alignment for GI: 254780615 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.48 E-value=0.0068 Score=37.85 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=27.2
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 23557021541003675666624899999998
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINN 172 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n 172 (478)
T Consensus 32 ~is~~i~~Ge~vaIvG~sGsGKSTL~~ll~gl 63 (226)
T cd03248 32 DVSFTLHPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 53899829999999999998499999999645