HHsearch alignment for GI: 254780615 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.68 E-value=0.005 Score=38.73 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=27.4
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 2355702154100367566662489999999885
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVA 174 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~ 174 (478)
T Consensus 20 ninl~i~~Ge~i~IvG~sGsGKSTLl~ll~gl~~ 53 (234)
T cd03251 20 DISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD 53 (234)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 6089987999999998999829999999966766