HHsearch alignment for GI: 254780615 and conserved domain: cd03266
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=92.50 E-value=0.06 Score=31.65 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=31.6
Q ss_pred CCCCCC-CCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCE
Q ss_conf 110023-557021541003675666624899999998850578852
Q gi|254780615|r 137 IKVIDL-ISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS 181 (478)
Q Consensus 137 IkaID~-l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~ 181 (478)
T Consensus 18 ~~al~~vs~~i~~Gei~gllG~NGaGKSTllk~i~Gl~~p~~G~i~ 63 (218)
T cd03266 18 VQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT 63 (218)
T ss_pred EEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
T ss_conf 8987262789859829999999998499999999779778974899