HHsearch alignment for GI: 254780615 and conserved domain: cd03271
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.68 E-value=0.039 Score=32.87 Aligned_cols=27 Identities=26% Similarity=0.296 Sum_probs=23.3
Q ss_pred CCCCCCCCEECCCCCCCCHHHHHHHHH
Q ss_conf 570215410036756666248999999
Q gi|254780615|r 144 SPYQKGGKIGLFGGAGVGKTVLIMELI 170 (478)
Q Consensus 144 ~pig~Gqr~gIfgg~GvGKT~l~~~~i 170 (478)
T Consensus 16 l~i~~G~~~aIiG~sGsGKSTLl~~~L 42 (261)
T cd03271 16 VDIPLGVLTCVTGVSGSGKSSLINDTL 42 (261)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 898899999998799986999999998