HHsearch alignment for GI: 254780615 and conserved domain: cd03294
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.10 E-value=0.011 Score=36.43 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=30.0
Q ss_pred CCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 2355702154100367566662489999999885057885268
Q gi|254780615|r 141 DLISPYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 183 (478)
Q Consensus 141 D~l~pig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~ 183 (478)
T Consensus 42 ~vsl~i~~GE~~~ivG~SGsGKSTLLr~i~G-L~~p~~G~I~~ 83 (269)
T cd03294 42 DVSLDVREGEIFVIMGLSGSGKSTLLRCINR-LIEPTSGKVLI 83 (269)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCCCCEEEEE
T ss_conf 7475888999999998998489999999975-99999759999