HHsearch alignment for GI: 254780615 and conserved domain: pfam00154
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=97.69 E-value=0.00013 Score=49.18 Aligned_cols=111 Identities=25% Similarity=0.360 Sum_probs=75.0
Q ss_pred CCCCCCCCCCCCCCCC---CCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf 4200023110023557---0215410036756666248999999988505788526876216434599999985424420
Q gi|254780615|r 130 ASILTTGIKVIDLISP---YQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIDSKVN 206 (478)
Q Consensus 130 ~e~L~TGIkaID~l~p---ig~Gqr~gIfgg~GvGKT~l~~~~i~n~~~~~~~v~V~~~iGER~rEv~e~~~e~~~~~~~ 206 (478)
T Consensus 30 ~~~i~tgs~~lD~aLg~GGlP~GRi~ei~G~essGKTtlal~~ia~aQk~-gg~~~~iD~-E~a~d-~~~a~~l---GV- 102 (322)
T pfam00154 30 VEVISTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDA-EHALD-PVYAKKL---GV- 102 (322)
T ss_pred CCEEECCHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEEH-HHHCC-HHHHHHC---CC-
T ss_conf 54461580899998758997787089998898777899999999999734-993899853-66059-8899980---98-
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHH
Q ss_conf 0122234443323169997176689678777777787768999866996799971559998
Q gi|254780615|r 207 IDPRKNNGSAVGSKCSLLYGQMNEPPGARSRVALTGLTVAEHFRDQGQDVLFFVDNIFRFT 267 (478)
Q Consensus 207 ~~~~~~~~~~~~~~tv~v~~~~~~~~~~r~~~~~~a~tiAEyfrd~g~dVll~~Dsltr~a 267 (478)
T Consensus 103 ----------D~~~--l~~~qpd--------~~Eqal~i~~~li~~~~~~liViDSvaal~ 143 (322)
T pfam00154 103 ----------DIDN--LLVSQPD--------TGEQALEIADMLVRSGAVDLIVVDSVAALV 143 (322)
T ss_pred ----------CHHH--EEEECCC--------HHHHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf ----------8025--3897788--------399999999998537997659982534567